RNA id: TU464572


Basic Information

Item Value
RNA id TU464572
length 211
lncRNA type inter_gene
GC content 0.25
exon number 1
gene id G404162
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 555853 ~ 556063 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTAAACTAAACTTAATTTACCGGTTTTATCCAATTGATTTGTCCAATGTATTCGAATTGACAAAATTAAAAAAAGTTATCTCAACTTTTGGGACTTTTTTTCTTTTTGATAAAAAAAGACAAAGTACTACAGAGAATGTAATATATTTTGAAGTAAGTTTTTTATTTTTTATGTACCAGGAGCAAATCTTCTTTACAGTTTTAAGCCTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464571 lncRNA downstream 202 555444 ~ 555651 (-) True G404161
TU464307 lncRNA downstream 29999 525521 ~ 525854 (-) True G403913
TU464268 lncRNA downstream 76703 478544 ~ 479150 (-) True G403875
TU464267 lncRNA downstream 77601 477970 ~ 478252 (-) True G403874
TU464259 lncRNA downstream 88503 467150 ~ 467350 (-) True G403867
TU464576 lncRNA upstream 30083 586146 ~ 586347 (-) True G404166
TU464578 lncRNA upstream 40505 596568 ~ 601001 (-) True G404168
TU464580 lncRNA upstream 49010 605073 ~ 605582 (-) True G404169
TU464603 lncRNA upstream 114771 723546 ~ 725288 (-) True G404190
TU464713 lncRNA upstream 569673 1125736 ~ 1127433 (-) True G404293
CI01000299_00452374_00452868.mRNA mRNA downstream 102985 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_00448948_00449565.mRNA mRNA downstream 106096 448863 ~ 449757 (-) True CI01000299_00448948_00449565
CI01000299_00185106_00209299.mRNA mRNA downstream 346554 184774 ~ 209299 (-) True CI01000299_00185106_00209299
CI01000299_00169255_00170695.mRNA mRNA downstream 384867 169223 ~ 170986 (-) True CI01000299_00169255_00170695
CI01000299_00670925_00672195.mRNA mRNA upstream 114617 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_01003547_01034507.mRNA mRNA upstream 447256 1003319 ~ 1034812 (-) True CI01000299_01003547_01034507
CI01000299_01057889_01063623.mRNA mRNA upstream 501757 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
CI01000299_01114487_01122666.mRNA mRNA upstream 557687 1113750 ~ 1124230 (-) True CI01000299_01114487_01122666
CI01000299_01222994_01268707.mRNA mRNA upstream 666796 1222859 ~ 1270326 (-) True CI01000299_01222994_01268707
TU464604 other upstream 114771 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU464792 other upstream 514544 1070607 ~ 1075891 (-) True G404372
TU465225 other upstream 1103592 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 1299576 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 1461624 2017687 ~ 2018050 (-) True G405053

Expression Profile