RNA id: TU464369


Basic Information

Item Value
RNA id TU464369
length 752
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G403971
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 602832 ~ 603583 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAATAATAATAAACAAATGTTTCTTGAGCAGCAAATCAGCATATTAGAATGATTTCTAAAGGATCATGTGACACTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGATCACAGGAATAAATTACATTTTAAAATATATTCAAATAGAAAACAGATATTTTAAATCGTAGTAATATTTCACAACATTACTGTTTTTATTGTATTTTTGATTAAATAAATGCAGCTTTGGTGAGCAGAAGAGACTTCTTTCAAAAACATTAACAAGTCTTACGGACTCCAAACTTTTGATAATGTCTGAATCTCTCCCTTAAATCCCTCCACTAAAAGCTTCCCCCAAAATAAATGTAAAAATATTATTATAGATTTAATGTGACCTTATAAGTCGCTGTCGATTCCGCCTCCCCCTCCACCGGGCAGATGTTTTCATTGTGATGGAGTCTGCAAACATCTCATTTCTGATGTGGCGACACCAGCCGAATACAAAGAGCTCGGCGATGTCAAAACCCGAGTCGTCGCTCATTGATGTGCGAATGAAGACCAACACCACGTCACATCTCTCAAAGGGGAATGGCTCATGATGAGGTTCAAACAGGTGGACAGACTGATAAAAAGGTTTCATTTATATGTAAATCAAAAGGGTGACCAATCAATTATTCTCATTTGAATAAAGACTCCTGTCCCCTACGCCCCATTGGACCATTGATTCGACTCCTAATTCCAGTCATGCCGACCCCCTTCAGCAGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464363 lncRNA upstream 19709 582756 ~ 583123 (+) True G403965
TU464350 lncRNA upstream 52090 550501 ~ 550742 (+) True G403952
TU463914 lncRNA upstream 440037 60419 ~ 162795 (+) True G403595
TU464416 lncRNA downstream 45832 649415 ~ 649814 (+) True G404016
TU464546 lncRNA downstream 467025 1070608 ~ 1075893 (+) False G404137
TU464547 lncRNA downstream 467025 1070608 ~ 1075769 (+) True G404137
TU464483 lncRNA downstream 519996 1123579 ~ 1125274 (+) True G404074
TU464484 lncRNA downstream 522157 1125740 ~ 1127444 (+) True G404075
CI01000299_00419297_00444862.mRNA mRNA upstream 156944 419297 ~ 445888 (+) True CI01000299_00419297_00444862
CI01000299_00345042_00361660.mRNA mRNA upstream 240746 345042 ~ 362086 (+) True CI01000299_00345042_00361660
CI01000299_00315123_00328550.mRNA mRNA upstream 272669 315123 ~ 330163 (+) True CI01000299_00315123_00328550
CI01000299_00255175_00294177.mRNA mRNA upstream 308655 255175 ~ 294177 (+) True CI01000299_00255175_00294177
CI01000299_00151569_00153623.mRNA mRNA upstream 448360 151519 ~ 154472 (+) True CI01000299_00151569_00153623
CI01000299_00689032_00727635.mRNA mRNA downstream 85323 688906 ~ 727836 (+) True CI01000299_00689032_00727635
CI01000299_00795673_00796901.mRNA mRNA downstream 192090 795673 ~ 797157 (+) True CI01000299_00795673_00796901
CI01000299_00826470_00828773.mRNA mRNA downstream 222850 826433 ~ 828960 (+) True CI01000299_00826470_00828773
CI01000299_00862803_00911972.mRNA mRNA downstream 259220 862803 ~ 911972 (+) True CI01000299_00862803_00911972
CI01000299_01036243_01046776.mRNA mRNA downstream 431454 1035037 ~ 1047603 (+) True CI01000299_01036243_01046776
TU463930 other upstream 192044 364139 ~ 410788 (+) True G403609
TU463894 other upstream 530561 35462 ~ 72271 (+) True G403578
TU464370 other downstream 1287 604870 ~ 606350 (+) True G403972
TU466101 other downstream 2551014 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 3527675 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 3691950 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 3886235 4505404 ~ 4505917 (+) True G405866

Expression Profile