RNA id: TU464580


Basic Information

Item Value
RNA id TU464580
length 510
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G404169
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 605073 ~ 605582 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGTCCGTGGCGGCCTGACAAATTCTGATGTTTCGCCATGAAAGAGGAAGCTGTTGTAACTCAGGCATACAATGTCCGATCTGCCCCAAACTTCACATGTGTGATAAGAGTCCTGGCCTAAAGACATCTATATGCCAATATTCAGTTAGTCATAGCGCCACCTGCTGGCAACAGAAAATGGCATGCTTTACACTGTAATTCACTCCCAGAAACACATTTCAATATGCCACAAAGTACCAAACACAGTAGAAACAGGTTAAATCATGCAACACTTGGCTAAGTGCTAATGTATGCGATTAACGCCACGAAATAATAGTCCCAGTTCGATAATAGTCCTGGCCTGAAGTCATCTACATGGCAATATTCAGTTACGGTCAAAGCGCCACCTGTTGGCAGCAGGAAGTCTGGCACTTTGAAATGACTTGGCCATAATTCTCCTGTATTTACTCGCTTACATGCATGTCGCCCACTGTTCACTGTTTTCCTAAGGCCAACGGTTGGCGGTGAGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464578 lncRNA downstream 4072 596568 ~ 601001 (-) True G404168
TU464576 lncRNA downstream 18726 586146 ~ 586347 (-) True G404166
TU464572 lncRNA downstream 49010 555853 ~ 556063 (-) True G404162
TU464571 lncRNA downstream 49422 555444 ~ 555651 (-) True G404161
TU464307 lncRNA downstream 79219 525521 ~ 525854 (-) True G403913
TU464603 lncRNA upstream 65252 723546 ~ 725288 (-) True G404190
TU464713 lncRNA upstream 520154 1125736 ~ 1127433 (-) True G404293
TU464800 lncRNA upstream 525461 1131043 ~ 1131262 (-) True G404380
TU464878 lncRNA upstream 541874 1147456 ~ 1147727 (-) True G404457
TU464916 lncRNA upstream 591859 1197441 ~ 1198241 (-) True G404484
CI01000299_00452374_00452868.mRNA mRNA downstream 152205 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_00448948_00449565.mRNA mRNA downstream 155316 448863 ~ 449757 (-) True CI01000299_00448948_00449565
CI01000299_00185106_00209299.mRNA mRNA downstream 395774 184774 ~ 209299 (-) True CI01000299_00185106_00209299
CI01000299_00169255_00170695.mRNA mRNA downstream 434087 169223 ~ 170986 (-) True CI01000299_00169255_00170695
CI01000299_00670925_00672195.mRNA mRNA upstream 65098 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_01003547_01034507.mRNA mRNA upstream 397737 1003319 ~ 1034812 (-) True CI01000299_01003547_01034507
CI01000299_01057889_01063623.mRNA mRNA upstream 452238 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
CI01000299_01114487_01122666.mRNA mRNA upstream 508168 1113750 ~ 1124230 (-) True CI01000299_01114487_01122666
CI01000299_01222994_01268707.mRNA mRNA upstream 617277 1222859 ~ 1270326 (-) True CI01000299_01222994_01268707
TU464604 other upstream 65252 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU464792 other upstream 465025 1070607 ~ 1075891 (-) True G404372
TU465225 other upstream 1054073 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 1250057 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 1412105 2017687 ~ 2018050 (-) True G405053

Expression Profile