RNA id: TU464792


Basic Information

Item Value
RNA id TU464792
length 583
RNA type TUCP
GC content 0.44
exon number 2
gene id G404372
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1070607 ~ 1075891 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGTATCTTTTGTTCTTTGAAACCACACTAATGGGGAAGACTGCTGACTTGGCAATGGTCCAGGAGACAATCATTGACACCCTCCACAAAGAGAGTAAGTCACAGAAGGTCATTACTGAATGGGGTGGCTGTTTACAGAGTGATGTATCAAAGCATATTAAATGCAAAGTTGACTGGAAGGAAGAAATTGGGTAGGCAAAGGTGCACAAGCAACAGGGATGACCGCAAGCTTGAGAATACTGTCAAGTAAAGCCGATTCAAACACTTGGGAGAGCTTCACATTGAGTAGAATGAAGCCGGAGTCAGCGCATCAAGAGTCACCACACTCAGACATCTTCAGGAAAAGGACTACCAAGCCACTTCTGAACCAGAGACAACGTCAGAAGCATCTTACCTGGGCTAAGGAGAAAAAGAACTGGACAGTGAACAGTGGTCGAAAGTCCTCTTTTCAGATAAAAGTAAATTTTGCATTTCATGTTGAAATCATGGTCCCAGAGTCTGAAGGAAGACTGGAGAGGCACAGAATCCAAGCTGCTTGAAGTCTAGTGTGAAGTTTCTGAAGTCAATAATGATTTGGGGGGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464603 lncRNA downstream 345319 723546 ~ 725288 (-) True G404190
TU464580 lncRNA downstream 465025 605073 ~ 605582 (-) True G404169
TU464578 lncRNA downstream 469606 596568 ~ 601001 (-) True G404168
TU464576 lncRNA downstream 484260 586146 ~ 586347 (-) True G404166
TU464572 lncRNA downstream 514544 555853 ~ 556063 (-) True G404162
TU464713 lncRNA upstream 49845 1125736 ~ 1127433 (-) True G404293
TU464800 lncRNA upstream 55152 1131043 ~ 1131262 (-) True G404380
TU464878 lncRNA upstream 71565 1147456 ~ 1147727 (-) True G404457
TU464916 lncRNA upstream 121550 1197441 ~ 1198241 (-) True G404484
TU464918 lncRNA upstream 123466 1199357 ~ 1200671 (-) True G404486
CI01000299_01057889_01063623.mRNA mRNA downstream 6984 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
CI01000299_01003547_01034507.mRNA mRNA downstream 35795 1003319 ~ 1034812 (-) True CI01000299_01003547_01034507
CI01000299_00670925_00672195.mRNA mRNA downstream 396982 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_00452374_00452868.mRNA mRNA downstream 617739 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_00448948_00449565.mRNA mRNA downstream 620850 448863 ~ 449757 (-) True CI01000299_00448948_00449565
CI01000299_01114487_01122666.mRNA mRNA upstream 37859 1113750 ~ 1124230 (-) True CI01000299_01114487_01122666
CI01000299_01222994_01268707.mRNA mRNA upstream 146968 1222859 ~ 1270326 (-) True CI01000299_01222994_01268707
CI01000299_01338052_01368900.mRNA mRNA upstream 261981 1337872 ~ 1369376 (-) True CI01000299_01338052_01368900
CI01000299_01419938_01421048.mRNA mRNA upstream 343638 1419529 ~ 1421048 (-) True CI01000299_01419938_01421048
CI01000299_01693958_01696561.mRNA mRNA upstream 617033 1692924 ~ 1697305 (-) True CI01000299_01693958_01696561
TU464604 other downstream 397751 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU465225 other upstream 583764 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 779748 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 941796 2017687 ~ 2018050 (-) True G405053
TU467961 other upstream 3065227 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 3400103 4475994 ~ 4550721 (-) True G407413

Expression Profile