RNA id: TU464916


Basic Information

Item Value
RNA id TU464916
length 801
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G404484
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1197441 ~ 1198241 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGCATATGTCACCGGTTTTGTTCACCTTCTTTATCTCTTCCGCTCACATCCCCCTTTTTCCAGAAGTCCAGGCTAGGGACACACAGACACCTTTGTGTGATTATTTTGCCACGATGGCAAGCCGAAGGACTGTCTGCATCCAAGGTCTCTCCTCCAATCCTTTTTCCTCCCTGCCAGCCAGCGAGACCACGGACTGGAAATAGCATTGATGGATTACTAATACGCCTGCTTGGGATGCAATGGAGCAGAGTGAATTTGAGCGTGTGCGTGTGTGTGCGAGGAAAACAAAGAAGTGGGAAGAGCAGGAAACCTTCTTGAAGGGGAAAACTGTCCTGTTCGGAAGCAAGCCTACACTTATATCAATCAACCCTCTATCAGAGGAAGACATTATCTGTTAGGTTTGGCCGTGCGAGAGGACACAGGAAACGGTCGATAACAGTAATGAAGGCTCATGAATTATTCACGCTGCGTTGGAAATTCACCCCTGGAAACCATTCTATAAAGAAACATCCGCCGTTTTCCCCTCTTTAGGGATGCCTCACGATTCTGCAAAATTTTACCTGTGATTGAAGCGGCATCATTAGGATTCTGCACATGTTGAATGTGCACATTTGTTTGCACGAGAACACGCGTGTGAACTTGAAGAGCCATTTCATCAACGCGAGAAGGAGGCCGTTTCACAAATGAGCCTTTCATCTCCAGTGCAGGGTAATTAACTGCTATTTAATGGACGGTGCCCACGCGCTCACTGCATTATCGACTGTGCGTGCTCGCTCGCTATCTACACGTTTATCAAGAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464878 lncRNA downstream 49714 1147456 ~ 1147727 (-) True G404457
TU464800 lncRNA downstream 66179 1131043 ~ 1131262 (-) True G404380
TU464713 lncRNA downstream 70008 1125736 ~ 1127433 (-) True G404293
TU464603 lncRNA downstream 472153 723546 ~ 725288 (-) True G404190
TU464580 lncRNA downstream 591859 605073 ~ 605582 (-) True G404169
TU464918 lncRNA upstream 1116 1199357 ~ 1200671 (-) True G404486
TU464925 lncRNA upstream 13466 1211707 ~ 1211930 (-) True G404493
TU464973 lncRNA upstream 111313 1309554 ~ 1309772 (-) True G404541
TU465037 lncRNA upstream 205673 1403914 ~ 1404355 (-) True G404604
TU465103 lncRNA upstream 268600 1466841 ~ 1500623 (-) True G404669
CI01000299_01114487_01122666.mRNA mRNA downstream 73211 1113750 ~ 1124230 (-) True CI01000299_01114487_01122666
CI01000299_01057889_01063623.mRNA mRNA downstream 133818 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
CI01000299_01003547_01034507.mRNA mRNA downstream 162629 1003319 ~ 1034812 (-) True CI01000299_01003547_01034507
CI01000299_00670925_00672195.mRNA mRNA downstream 523816 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_00452374_00452868.mRNA mRNA downstream 744573 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_01222994_01268707.mRNA mRNA upstream 24618 1222859 ~ 1270326 (-) True CI01000299_01222994_01268707
CI01000299_01338052_01368900.mRNA mRNA upstream 139631 1337872 ~ 1369376 (-) True CI01000299_01338052_01368900
CI01000299_01419938_01421048.mRNA mRNA upstream 221288 1419529 ~ 1421048 (-) True CI01000299_01419938_01421048
CI01000299_01693958_01696561.mRNA mRNA upstream 494683 1692924 ~ 1697305 (-) True CI01000299_01693958_01696561
CI01000299_02670695_02682116.mRNA mRNA upstream 1472355 2670596 ~ 2682116 (-) True CI01000299_02670695_02682116
TU464792 other downstream 121550 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 524585 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU465225 other upstream 461414 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 657398 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 819446 2017687 ~ 2018050 (-) True G405053
TU467961 other upstream 2942877 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 3277753 4475994 ~ 4550721 (-) True G407413

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU1095 True 2210 TUCP 0.46 2 NC_056699.1 3334658 ~ 3340876 (+)