RNA id: TU464918


Basic Information

Item Value
RNA id TU464918
length 302
lncRNA type intronic
GC content 0.45
exon number 2
gene id G404486
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1199357 ~ 1200671 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCAATGATGGCACAACATCGCACAGCTTCTGGTTGTGAAACTGATAGCTCTGGCCCTCACATAACCTCCCCTCTTGATTTTGAGCCACACTTCTTTGGAGCTGCACACACACTCTTTTTAGTTTGTTTGAGGCTGATAGTGCAGACGAGGAGGAACACAAAAGCAGGTGATGAGAAAGCAGGAGACTGCATTAAAACAAACAGTCACCGTGTGCTCTGAAAAACATCACATTTTTGAAGCACATCACATCGATTCTGGAAACACAATGTTCGATTCCCTGCTGTAAGAAAAAAGGCACCGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU464916 lncRNA downstream 1116 1197441 ~ 1198241 (-) True G404484
TU464878 lncRNA downstream 51630 1147456 ~ 1147727 (-) True G404457
TU464800 lncRNA downstream 68095 1131043 ~ 1131262 (-) True G404380
TU464713 lncRNA downstream 71924 1125736 ~ 1127433 (-) True G404293
TU464603 lncRNA downstream 474069 723546 ~ 725288 (-) True G404190
TU464925 lncRNA upstream 11036 1211707 ~ 1211930 (-) True G404493
TU464973 lncRNA upstream 108883 1309554 ~ 1309772 (-) True G404541
TU465037 lncRNA upstream 203243 1403914 ~ 1404355 (-) True G404604
TU465103 lncRNA upstream 266170 1466841 ~ 1500623 (-) True G404669
TU465212 lncRNA upstream 403629 1604300 ~ 1604628 (-) True G404771
CI01000299_01114487_01122666.mRNA mRNA downstream 75127 1113750 ~ 1124230 (-) True CI01000299_01114487_01122666
CI01000299_01057889_01063623.mRNA mRNA downstream 135734 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
CI01000299_01003547_01034507.mRNA mRNA downstream 164545 1003319 ~ 1034812 (-) True CI01000299_01003547_01034507
CI01000299_00670925_00672195.mRNA mRNA downstream 525732 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_00452374_00452868.mRNA mRNA downstream 746489 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_01222994_01268707.mRNA mRNA upstream 22188 1222859 ~ 1270326 (-) True CI01000299_01222994_01268707
CI01000299_01338052_01368900.mRNA mRNA upstream 137201 1337872 ~ 1369376 (-) True CI01000299_01338052_01368900
CI01000299_01419938_01421048.mRNA mRNA upstream 218858 1419529 ~ 1421048 (-) True CI01000299_01419938_01421048
CI01000299_01693958_01696561.mRNA mRNA upstream 492253 1692924 ~ 1697305 (-) True CI01000299_01693958_01696561
CI01000299_02670695_02682116.mRNA mRNA upstream 1469925 2670596 ~ 2682116 (-) True CI01000299_02670695_02682116
TU464792 other downstream 123466 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 526501 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU465225 other upstream 458984 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 654968 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 817016 2017687 ~ 2018050 (-) True G405053
TU467961 other upstream 2940447 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 3275323 4475994 ~ 4550721 (-) True G407413

Expression Profile