RNA id: TU465212


Basic Information

Item Value
RNA id TU465212
length 329
lncRNA type inter_gene
GC content 0.63
exon number 1
gene id G404771
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1604300 ~ 1604628 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCGTTCACCCCCACGTGCAGAACAACAGCTCCGATGCTCTCAGCGCCATTCAGGATCGCGGGAACCTGCGCAGAGACATCGAGAACACGAGCACCAGGAAAACAGTGACTGCGCACCTTACCTTTGGTTGTGGTAGCGTGGACGTGACGGACGATGGAGTCTCCGATGACCACGGCGTCGCGTTCTGCCTCGCGAAGAGGGGAGAAGCGGTTCCTCGTCGAGACCTCGAAGACCGGGGGCGGCGGAAGGGGAGAGGTCCTGGTCCGAGGCCTGGCTCACGCCTTCCGTTGCTGAAGAACCCAAGGTCCCTGGTGTGACGGCGCCGGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465103 lncRNA downstream 103677 1466841 ~ 1500623 (-) True G404669
TU465037 lncRNA downstream 199945 1403914 ~ 1404355 (-) True G404604
TU464973 lncRNA downstream 294528 1309554 ~ 1309772 (-) True G404541
TU464925 lncRNA downstream 392370 1211707 ~ 1211930 (-) True G404493
TU464918 lncRNA downstream 403629 1199357 ~ 1200671 (-) True G404486
TU465213 lncRNA upstream 82 1604710 ~ 1605108 (-) True G404772
TU465218 lncRNA upstream 27268 1631896 ~ 1632336 (-) True G404777
TU465219 lncRNA upstream 31049 1635677 ~ 1635957 (-) True G404778
TU465205 lncRNA upstream 81419 1686047 ~ 1691281 (-) True G404765
TU465241 lncRNA upstream 101399 1706027 ~ 1706240 (-) True G404800
CI01000299_01419938_01421048.mRNA mRNA downstream 183252 1419529 ~ 1421048 (-) True CI01000299_01419938_01421048
CI01000299_01338052_01368900.mRNA mRNA downstream 234924 1337872 ~ 1369376 (-) True CI01000299_01338052_01368900
CI01000299_01222994_01268707.mRNA mRNA downstream 333974 1222859 ~ 1270326 (-) True CI01000299_01222994_01268707
CI01000299_01114487_01122666.mRNA mRNA downstream 480070 1113750 ~ 1124230 (-) True CI01000299_01114487_01122666
CI01000299_01057889_01063623.mRNA mRNA downstream 540677 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
CI01000299_01693958_01696561.mRNA mRNA upstream 88296 1692924 ~ 1697305 (-) True CI01000299_01693958_01696561
CI01000299_02670695_02682116.mRNA mRNA upstream 1065968 2670596 ~ 2682116 (-) True CI01000299_02670695_02682116
CI01000299_02723315_02728716.mRNA mRNA upstream 1118592 2723220 ~ 2728753 (-) True CI01000299_02723315_02728716
CI01000299_02761916_02788258.mRNA mRNA upstream 1156786 2761414 ~ 2788437 (-) True CI01000299_02761916_02788258
CI01000299_02833341_02845817.mRNA mRNA upstream 1228462 2833090 ~ 2845870 (-) True CI01000299_02833341_02845817
TU464792 other downstream 528409 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 931444 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU465225 other upstream 55027 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 251011 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 413059 2017687 ~ 2018050 (-) True G405053
TU467961 other upstream 2536490 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 2871366 4475994 ~ 4550721 (-) True G407413

Expression Profile