RNA id: TU465218


Basic Information

Item Value
RNA id TU465218
length 441
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G404777
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1631896 ~ 1632336 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATCATCCAAAGATTCAGAGAATCTGGAACAATCTCTGTGCGTAAGGGTCAAGGCCAGAAAACCATACTAGATGCCCGTGATCTTCGGGCCCTTAGACGGCACTGCATCACATACAGGAATGCTACTGTAATGGAAATCACAACATGGGCTCAGGAATACTTCCAGAAAACATTGTCGGTGAACACAATCCACCGTGCCATTCGCCGTTGCCGGCTAAAACTCTATAGGTCAAAAAAGAAGCCATATCTAAACTTGATCCAGAAGCGCAGGCGTTTTCTCTGGGCCAAGGCTCATTTAAAATGGACAGTGGCAAAGTGGAACACTGTTCTGTGGTCAGACGAATGAAAATTTGAAGTTCTTTTTGGAAAACTGGGACGCCATGTCATCCGGACTAAAGAGGACAAGGACAACCCAAGTTGTTATCAGCGCTCAGTTCAGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465213 lncRNA downstream 26788 1604710 ~ 1605108 (-) True G404772
TU465212 lncRNA downstream 27268 1604300 ~ 1604628 (-) True G404771
TU465103 lncRNA downstream 131273 1466841 ~ 1500623 (-) True G404669
TU465037 lncRNA downstream 227541 1403914 ~ 1404355 (-) True G404604
TU464973 lncRNA downstream 322124 1309554 ~ 1309772 (-) True G404541
TU465219 lncRNA upstream 3341 1635677 ~ 1635957 (-) True G404778
TU465205 lncRNA upstream 53711 1686047 ~ 1691281 (-) True G404765
TU465241 lncRNA upstream 73691 1706027 ~ 1706240 (-) True G404800
TU465505 lncRNA upstream 373840 2006176 ~ 2006729 (-) True G405049
TU465507 lncRNA upstream 384748 2017084 ~ 2017314 (-) True G405051
CI01000299_01419938_01421048.mRNA mRNA downstream 210848 1419529 ~ 1421048 (-) True CI01000299_01419938_01421048
CI01000299_01338052_01368900.mRNA mRNA downstream 262520 1337872 ~ 1369376 (-) True CI01000299_01338052_01368900
CI01000299_01222994_01268707.mRNA mRNA downstream 361570 1222859 ~ 1270326 (-) True CI01000299_01222994_01268707
CI01000299_01114487_01122666.mRNA mRNA downstream 507666 1113750 ~ 1124230 (-) True CI01000299_01114487_01122666
CI01000299_01057889_01063623.mRNA mRNA downstream 568273 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
CI01000299_01693958_01696561.mRNA mRNA upstream 60588 1692924 ~ 1697305 (-) True CI01000299_01693958_01696561
CI01000299_02670695_02682116.mRNA mRNA upstream 1038260 2670596 ~ 2682116 (-) True CI01000299_02670695_02682116
CI01000299_02723315_02728716.mRNA mRNA upstream 1090884 2723220 ~ 2728753 (-) True CI01000299_02723315_02728716
CI01000299_02761916_02788258.mRNA mRNA upstream 1129078 2761414 ~ 2788437 (-) True CI01000299_02761916_02788258
CI01000299_02833341_02845817.mRNA mRNA upstream 1200754 2833090 ~ 2845870 (-) True CI01000299_02833341_02845817
TU464792 other downstream 556005 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 959040 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU465225 other upstream 27319 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 223303 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 385351 2017687 ~ 2018050 (-) True G405053
TU467961 other upstream 2508782 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 2843658 4475994 ~ 4550721 (-) True G407413

Expression Profile