RNA id: TU465219


Basic Information

Item Value
RNA id TU465219
length 281
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G404778
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1635677 ~ 1635957 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGGCGTGCTCTTGCTCTTGTTCTTCTGGGTGATGTAAGTGTGCACGCTTATCAGGGAGAAGTGCCTACACAAGGAATTCCGCTCTCTTTTGACGTCATACAGGCCATACTCAAAAAAAACTCTCCGAAACCCGGTCTGAAACCGGAAGTAATGTATTTGGCACAGAAATACTCTGTCATACGTCCAACTCGTGTTTTGAAACTTTGGCCATGTTTAGCATGAGAAAGCAACACTTTAACAGTGTAAATAAGTCAGAATGCATGAAATAGCTTTATACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465218 lncRNA downstream 3341 1631896 ~ 1632336 (-) True G404777
TU465213 lncRNA downstream 30569 1604710 ~ 1605108 (-) True G404772
TU465212 lncRNA downstream 31049 1604300 ~ 1604628 (-) True G404771
TU465103 lncRNA downstream 135054 1466841 ~ 1500623 (-) True G404669
TU465037 lncRNA downstream 231322 1403914 ~ 1404355 (-) True G404604
TU465205 lncRNA upstream 50090 1686047 ~ 1691281 (-) True G404765
TU465241 lncRNA upstream 70070 1706027 ~ 1706240 (-) True G404800
TU465505 lncRNA upstream 370219 2006176 ~ 2006729 (-) True G405049
TU465507 lncRNA upstream 381127 2017084 ~ 2017314 (-) True G405051
TU465523 lncRNA upstream 393648 2029605 ~ 2030051 (-) True G405067
CI01000299_01419938_01421048.mRNA mRNA downstream 214629 1419529 ~ 1421048 (-) True CI01000299_01419938_01421048
CI01000299_01338052_01368900.mRNA mRNA downstream 266301 1337872 ~ 1369376 (-) True CI01000299_01338052_01368900
CI01000299_01222994_01268707.mRNA mRNA downstream 365351 1222859 ~ 1270326 (-) True CI01000299_01222994_01268707
CI01000299_01114487_01122666.mRNA mRNA downstream 511447 1113750 ~ 1124230 (-) True CI01000299_01114487_01122666
CI01000299_01057889_01063623.mRNA mRNA downstream 572054 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
CI01000299_01693958_01696561.mRNA mRNA upstream 56967 1692924 ~ 1697305 (-) True CI01000299_01693958_01696561
CI01000299_02670695_02682116.mRNA mRNA upstream 1034639 2670596 ~ 2682116 (-) True CI01000299_02670695_02682116
CI01000299_02723315_02728716.mRNA mRNA upstream 1087263 2723220 ~ 2728753 (-) True CI01000299_02723315_02728716
CI01000299_02761916_02788258.mRNA mRNA upstream 1125457 2761414 ~ 2788437 (-) True CI01000299_02761916_02788258
CI01000299_02833341_02845817.mRNA mRNA upstream 1197133 2833090 ~ 2845870 (-) True CI01000299_02833341_02845817
TU464792 other downstream 559786 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 962821 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU465225 other upstream 23698 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 219682 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 381730 2017687 ~ 2018050 (-) True G405053
TU467961 other upstream 2505161 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 2840037 4475994 ~ 4550721 (-) True G407413

Expression Profile