Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU465205 |
| length | 5235 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 1 |
| gene id | G404765 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 1686047 ~ 1691281 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU465219 | lncRNA | downstream | 50090 | 1635677 ~ 1635957 (-) | True | G404778 |
| TU465218 | lncRNA | downstream | 53711 | 1631896 ~ 1632336 (-) | True | G404777 |
| TU465213 | lncRNA | downstream | 80939 | 1604710 ~ 1605108 (-) | True | G404772 |
| TU465212 | lncRNA | downstream | 81419 | 1604300 ~ 1604628 (-) | True | G404771 |
| TU465103 | lncRNA | downstream | 185424 | 1466841 ~ 1500623 (-) | True | G404669 |
| TU465241 | lncRNA | upstream | 14746 | 1706027 ~ 1706240 (-) | True | G404800 |
| TU465505 | lncRNA | upstream | 314895 | 2006176 ~ 2006729 (-) | True | G405049 |
| TU465507 | lncRNA | upstream | 325803 | 2017084 ~ 2017314 (-) | True | G405051 |
| TU465523 | lncRNA | upstream | 338324 | 2029605 ~ 2030051 (-) | True | G405067 |
| TU465524 | lncRNA | upstream | 338920 | 2030201 ~ 2030437 (-) | True | G405068 |
| CI01000299_01419938_01421048.mRNA | mRNA | downstream | 264999 | 1419529 ~ 1421048 (-) | True | CI01000299_01419938_01421048 |
| CI01000299_01338052_01368900.mRNA | mRNA | downstream | 316671 | 1337872 ~ 1369376 (-) | True | CI01000299_01338052_01368900 |
| CI01000299_01222994_01268707.mRNA | mRNA | downstream | 415721 | 1222859 ~ 1270326 (-) | True | CI01000299_01222994_01268707 |
| CI01000299_01114487_01122666.mRNA | mRNA | downstream | 561817 | 1113750 ~ 1124230 (-) | True | CI01000299_01114487_01122666 |
| CI01000299_01057889_01063623.mRNA | mRNA | downstream | 622424 | 1057820 ~ 1063623 (-) | True | CI01000299_01057889_01063623 |
| CI01000299_01693958_01696561.mRNA | mRNA | upstream | 1643 | 1692924 ~ 1697305 (-) | True | CI01000299_01693958_01696561 |
| CI01000299_02670695_02682116.mRNA | mRNA | upstream | 979315 | 2670596 ~ 2682116 (-) | True | CI01000299_02670695_02682116 |
| CI01000299_02723315_02728716.mRNA | mRNA | upstream | 1031939 | 2723220 ~ 2728753 (-) | True | CI01000299_02723315_02728716 |
| CI01000299_02761916_02788258.mRNA | mRNA | upstream | 1070133 | 2761414 ~ 2788437 (-) | True | CI01000299_02761916_02788258 |
| CI01000299_02833341_02845817.mRNA | mRNA | upstream | 1141809 | 2833090 ~ 2845870 (-) | True | CI01000299_02833341_02845817 |
| TU465225 | other | downstream | 26047 | 1659655 ~ 1660000 (-) | True | G404784 |
| TU464792 | other | downstream | 610156 | 1070607 ~ 1075891 (-) | True | G404372 |
| TU464604 | other | downstream | 1013191 | 670834 ~ 672856 (-) | True | CI01000299_00670925_00672195 |
| TU465428 | other | upstream | 164358 | 1855639 ~ 1880988 (-) | True | G404976 |
| TU465509 | other | upstream | 326406 | 2017687 ~ 2018050 (-) | True | G405053 |
| TU467961 | other | upstream | 2449837 | 4163313 ~ 4164324 (-) | True | CI01000299_04158468_04164223 |
| TU468104 | other | upstream | 2784713 | 4475994 ~ 4550721 (-) | True | G407413 |
| TU468235 | other | upstream | 3234687 | 4925968 ~ 4928818 (-) | True | G407509 |
