RNA id: TU465428



Basic Information


Item Value
RNA id TU465428
length 3765
RNA type TUCP
GC content 0.42
exon number 2
gene id G404976
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 1855639 ~ 1880988 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTTATTTTTTTATTTTTTTTTATTTACAGCGTAATTGGTACCACATTGAAGGCACACAAACATATAAATGTTAAATTATGTACAAATATACAGAATAAATAACTATCATCCACACTTGTACAAAATAAAGCTATGGTGCTCTTCCATACAGTAAAACATTTCAAGGCTCAACACAATAATTTGTGTGCATAATTTCTCTATACATATACATATATAGATATATATTTTCTTTTTCTTCTCCAGCCACATAATGAAGATAAAACACCCTGCATAATTGTCATGCTGAAAGAAAATATTCAGATATGATTTGCGTCGAAAGGAACTTTAAACAACATTATTTTACAAACCAGAAGCTACACTACTCGGTTTTCCTATGGGAAAAAATGGCATAGACTGTGCGGCCCGACAACGTGATTGTCATCAACCACCTTTAAATGGTATTTTAAGTAGTGCAATTCTTTTCTTTTCATTTTCACCAAGGATACCCAGCAGAGTTTTTGTCCATATCAGAAGCAGTGGTGGTAATGAGCAAGTGGGTCTGGATAACATAATTTCTGAACAAACTCTCCAGGCGTGTTGACAATTCCAGGTGAGACGCCAATTTCAGGCATGATAAATGAGCCCAGTCATAAAGTCTAACCTCAGGGTCAAAACAATAGCCACTTGGCAAGCTATTTGCTGTTGATGACGCCTTATTTATTAATAAATGCAATTTTCAGACATCTTGAGATCTAAGTACCACCATTATTTAATATTTAATGAACAAAAACTGTGTTGGGCATGTTTAATTCAAAGCTTAGCAAATCAGGGAATGTTTTAACTAACCATAAATGTTCTGTCTGACAGAAAAAAAAAAAGAAGGAAAACATGTTTTCTTCCATTGCTACAAATAAACAGAGCTTAAAGATCTGTCACATACATAATAAGAGATACACAGATAGAAATGTGAAGTGACTCTATGCTAGTCTCCCCTACCATGTAGCAAACATAAAGAGAATACATTAACCACAATGCAAAACAAATGTTCTGGTATCAAAGCCAATCTTGTCCAAAGATGTAACTCTGTGACTCTTTCTGTGTGATTGAAATTGTGTTAGAATGTATAATCCATCATCTGTAATGTCCAATAGCATGCTAACGCTAAAGGTCCACCTGAAATTAGGCATTGTGTCAGCGTCAAATGATTGTATCATAAGAATTGCCTCTACTCTGACATTGTTGTATTATATCTCTCGGGCTAAATCAGAACTTAGAATGGACTGTCAAGGCACTTGAAGTATCATTTGTCAAATCAAAGTATGTGTACTTATCTCAGTTGAAAGTCGATTGATGCTCTAAGACTTCTAAATAGTCTGGTTCGGCATGTAAGTTGGCTTTGAGCTCAAAGTACTCATTTTTAGTCTGTTCCACCATGACCTTCCTCGGCCTCGTATAAACGAGAGTCTCCATTAGTTTCAACTCTTTGTGGTGGTTGGGGACTTGCATGTTGTCCACAGCTGGTTGTAGCTGTGATATGTTTTTCCTGAGATATTCGGTGAGGCTGAGCTGTTGGCGCTCCCGTTCCCTTTCTAAGATGTTCTTGTACAAGGAGTTCGCATCTCCCAAACTCACAAACTCAGCAGGGTAGTCGGTGACGGCCCTGAACTTCACGTTAGGGAGGGATTCGTTGTCCTTTTCAAGGATGCTATGGCAGATATGCTTAGGTTTATCGCTGTCGTAGTCATCTAACTCGTATTCTTTGTGCTGAGAGCAGTAACTAGGGTTCCTGCAGACCTGAACGATGGGGCTACGGGAAGGTTCGTCGTACATGCTAGGTCCTTGCCTTTCAGTTACGTGGTGGGTGGTTTTCTGGCCATACATGCTGTAGTGCAGGTGGATGGGACTGCTCTCGCGAGGTTGCTCCTCGGCCTGTTTCTTTTTGGCCTGTCTCCGGCGACGGTGTAGCATAAACACGACAATCCCGGCAGAACAGAAAATGATGGTCAGTAAAAGGATGAGAAGGCAGAGGATGAGCACCGATAGTGGCACCGCATCTGTCAGGGACCGGAACAAGCTGCTGGTGCCGCCTTCCGGTGCAGTCGTGACTGGGATACCACCCTCTGTGGACTCATAGGTTACCAAGCCAGGGCAGAGAGCATCATGCTTCAGGTTTCTAACATCAGCAGTAGACAGTTTTTGAGGAGTGTGGCATAAGATGGCGCCCACCACGATGTCTTTGCTAAGCTTTTCCACCCACTGTTTGAGGCTGACCAAATCACAAGTGCAGTCCCAAGGATTGTCCTCAAGATAAATTTGCTCCAAATAATTGAGCTGGTCCAACACATTACTCACTGGTAAGTGCATCAAGACATTTTTACTTAGGTTCAATTGCACCAATGGCACATTACGAAATATTTGTGCAGGGAGAGTGTTGAGTCGATTGTTATTTAGGAACAGGAGCTTTAGATTTGTCAAAGGGTTGAACGATCCAGCCTCGATCTCTTTGATGACATTATGCTCCAAGTACAAATATTCCAGGTTGTGAAGGCCAAGAAACATTGTTGCAGAGACTTTCCCTATCCTGTTTTCATTCAGGTACAGCTTTTTCAGATTGCTCAAACTCAGAAAAGTTTCATTGTCGATGTAGTCTATTTGGTTGTTTGCCAAATTGAGCAATTCCAAACTGTCGTACGTCACAAAGTCATATTTGAAAAGTCTTTGTATCATATTTCCTGTCAAAACCAGCATAGTTGGGCTTCGTTCAAGAATGCCCAGATCAGATATCCTTTGAATGCCTTTGTCCTCACATTGCATTAAAAAACCCATTTTGTCACAAGAGCACATTGACACGCAAAACGTCCCTAGGCCGTTTGCAGGTGTTGGTATCTTTGCATCATCTTTGGCATTCGGTATCTGAACAACCTTAGTGGATGGGGTGACAACCATGTCTAGAGATTTCGATGGCTCTTCGAGGTTGATGTCAATATGAGAGGGGCAAAGTAAATCCCTTTTGACCCTAGCCAAACTGGTGCCCCTAAGATCTTCAGGCCAGTTGCAAACCACCTCGCCAATGGATGACTGTGCTCGCATGTTCTCAATCCAGACCCTTAAATGTAAGATTTCGCAATTACACACCCAGTCATTGTCCTCCAACAGGAGCTCCATGATACGACCAATATGCTCCAGGAAACCCACGTACGGCAGTGTCTGCAGCTTGTTCCCACGCAGATCCAAATGTGTCAGAGGCACGAAGCGGAAAATGTTGCTCGGAAGGAACTCGATGGAGTTGTCATTGAGGATCAGAACTTTAAGACGGACAAGCTTGCTGAAGGCCCCAGGCTCCACGACCCGGATGAAGTTGGTGTCAGCCTGAAGGTATTCCAAATTTACCAAGCCTTGAAATGTGTCCTCCTTCAGCATGACAAGGAAATTGCTGTTTATGTGCAACTTCCTCAGGGATCCCAGCGCACTGAACACGCCAGGTTCAAGCTCCTGTATGCTGTTGGCACCAAGATGTAAAGTGATGGCGTTCTTGAAAGCATCTATATCCTCTGCAAGTAACTCCACTAGGTCATTTTTGTATAAATTTAGATGAAAAGGTTTATCTGATGGTACTTCAACATCTGACATTTTACTTATGTTTCTTTCCTCACAGTTGATGTACAACTGTCCATCTTTCTCCTCACAGGTGCACAAAGATTTGCAAGCTCCATCGTACAGCACCTTGGGCTCAGTATCTTCAAGACTAGCACCAGCAAAGAAGGAGCAAACGAAAATAATCCTGGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU465241 lncRNA downstream 149399 1706027 ~ 1706240 (-) True G404800
TU465205 lncRNA downstream 164358 1686047 ~ 1691281 (-) True G404765
TU465219 lncRNA downstream 219682 1635677 ~ 1635957 (-) True G404778
TU465218 lncRNA downstream 223303 1631896 ~ 1632336 (-) True G404777
TU465213 lncRNA downstream 250531 1604710 ~ 1605108 (-) True G404772
TU465505 lncRNA upstream 125188 2006176 ~ 2006729 (-) True G405049
TU465507 lncRNA upstream 136096 2017084 ~ 2017314 (-) True G405051
TU465523 lncRNA upstream 148617 2029605 ~ 2030051 (-) True G405067
TU465524 lncRNA upstream 149213 2030201 ~ 2030437 (-) True G405068
TU467140 lncRNA upstream 176682 2057670 ~ 2057886 (-) True G406539
CI01000299_01693958_01696561.mRNA mRNA downstream 158334 1692924 ~ 1697305 (-) True CI01000299_01693958_01696561
CI01000299_01419938_01421048.mRNA mRNA downstream 434591 1419529 ~ 1421048 (-) True CI01000299_01419938_01421048
CI01000299_01338052_01368900.mRNA mRNA downstream 486263 1337872 ~ 1369376 (-) True CI01000299_01338052_01368900
CI01000299_01222994_01268707.mRNA mRNA downstream 585313 1222859 ~ 1270326 (-) True CI01000299_01222994_01268707
CI01000299_01114487_01122666.mRNA mRNA downstream 731409 1113750 ~ 1124230 (-) True CI01000299_01114487_01122666
CI01000299_02670695_02682116.mRNA mRNA upstream 789608 2670596 ~ 2682116 (-) True CI01000299_02670695_02682116
CI01000299_02723315_02728716.mRNA mRNA upstream 842232 2723220 ~ 2728753 (-) True CI01000299_02723315_02728716
CI01000299_02761916_02788258.mRNA mRNA upstream 880426 2761414 ~ 2788437 (-) True CI01000299_02761916_02788258
CI01000299_02833341_02845817.mRNA mRNA upstream 952102 2833090 ~ 2845870 (-) True CI01000299_02833341_02845817
CI01000299_02850281_02876863.mRNA mRNA upstream 969293 2850281 ~ 2876863 (-) True CI01000299_02850281_02876863
TU465225 other downstream 195639 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 779748 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 1182783 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU465509 other upstream 136699 2017687 ~ 2018050 (-) True G405053
TU467961 other upstream 2260130 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 2595006 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 3044980 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 3560349 5455914 ~ 5456108 (-) True G407665

Expression Profile