RNA id: TU465505


Basic Information

Item Value
RNA id TU465505
length 554
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G405049
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 2006176 ~ 2006729 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACAGAAAGTATTCAGACCCCCTTAAATTTTTCACTCTTTGTTATATTGCAGCCATTTGCTAAAATCATTTAAGTTCTTTTTTTTTTCCTCAATGTACACACAGCACCCCATATTGACAGAAAAACACAGAATTGTTGACATTTTTGCAGATTTATTAAAAAAAGAAAAACTGAAATATCACATGGTCCTAAGTATTCAGACCCTTTGCTCAGTATTTAGTAGAAGCACCCTTTTGATCTAATACAGCCATGAGTCTTTTTGGGAAAGATGCAACAAGTTTTTCACACCTGGATTTGGGGATCCTCTGCCATTCCTCCTTGCAGATCCTCTCCAGTTCTGTCAGGTTGGATGGTAAACGTTGGTGGACAGCCATTTTTAGGTCTCTCCAGAGATGCTCAATTGGGTTTAAGTCAGGGCTCTGGCTGGGCCATTCAAGAACAGTCACGGAGTTGTTGTGAAGCCACTCCTTTGTTATTTTAGCTGTGTGCTTAGGGTCATTGTCTTGTTGGAAGGTAAACCTTCGGCCCAGTCTGAGGTCCTGAGCACTCTGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465241 lncRNA downstream 299936 1706027 ~ 1706240 (-) True G404800
TU465205 lncRNA downstream 314895 1686047 ~ 1691281 (-) True G404765
TU465219 lncRNA downstream 370219 1635677 ~ 1635957 (-) True G404778
TU465218 lncRNA downstream 373840 1631896 ~ 1632336 (-) True G404777
TU465213 lncRNA downstream 401068 1604710 ~ 1605108 (-) True G404772
TU465507 lncRNA upstream 10355 2017084 ~ 2017314 (-) True G405051
TU465523 lncRNA upstream 22876 2029605 ~ 2030051 (-) True G405067
TU465524 lncRNA upstream 23472 2030201 ~ 2030437 (-) True G405068
TU467140 lncRNA upstream 50941 2057670 ~ 2057886 (-) True G406539
TU467152 lncRNA upstream 88314 2095043 ~ 2095356 (-) True G406551
CI01000299_01693958_01696561.mRNA mRNA downstream 308871 1692924 ~ 1697305 (-) True CI01000299_01693958_01696561
CI01000299_01419938_01421048.mRNA mRNA downstream 585128 1419529 ~ 1421048 (-) True CI01000299_01419938_01421048
CI01000299_01338052_01368900.mRNA mRNA downstream 636800 1337872 ~ 1369376 (-) True CI01000299_01338052_01368900
CI01000299_01222994_01268707.mRNA mRNA downstream 735850 1222859 ~ 1270326 (-) True CI01000299_01222994_01268707
CI01000299_01114487_01122666.mRNA mRNA downstream 881946 1113750 ~ 1124230 (-) True CI01000299_01114487_01122666
CI01000299_02670695_02682116.mRNA mRNA upstream 663867 2670596 ~ 2682116 (-) True CI01000299_02670695_02682116
CI01000299_02723315_02728716.mRNA mRNA upstream 716491 2723220 ~ 2728753 (-) True CI01000299_02723315_02728716
CI01000299_02761916_02788258.mRNA mRNA upstream 754685 2761414 ~ 2788437 (-) True CI01000299_02761916_02788258
CI01000299_02833341_02845817.mRNA mRNA upstream 826361 2833090 ~ 2845870 (-) True CI01000299_02833341_02845817
CI01000299_02850281_02876863.mRNA mRNA upstream 843552 2850281 ~ 2876863 (-) True CI01000299_02850281_02876863
TU465428 other downstream 125188 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 346176 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 930285 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 1333320 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU465509 other upstream 10958 2017687 ~ 2018050 (-) True G405053
TU467961 other upstream 2134389 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 2469265 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 2919239 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 3434608 5455914 ~ 5456108 (-) True G407665

Expression Profile