RNA id: TU467243


Basic Information

Item Value
RNA id TU467243
length 446
lncRNA type antisense_over
GC content 0.53
exon number 4
gene id G406630
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 2705521 ~ 2706692 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATCCCGCAGCTTCTCAAGAACAGACCACAGACTTCCCTTACTGATGTACGGGAGCAACAGCCAGGCTTCGCACTTTCCGCCACGCTCCATGAAGGTGTGTGAGGTCAGGGTGAGGATGTTGGGGTGGTTGAAGAGGCGGTGCATCTCCACCTCGGTCTGAGCCTCCTTACGGGCCTCGCGGTCATGGCAAAGGATTCGCTTTAGAGCATAGAAGCGTCCATCATGTGCACCCTCGACCAGGTCAACATAGCTGAAACCTCCTTCTTCTAGTTTCTGGAGGAAGAAGTATCTCTTGTTGTCAATTGTGATGACACTGCGCGAGCAGATACACAAAGCTTGTCCCATTTTCTCTGGAGCATTGCTTAGGACCAACCATGGATGGAGGAGAGGCACTGAGACGCTCTCCTTCTTGTCCTCCGCTGATTTCTCCGGTTTCTTCCGTGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467344 lncRNA downstream 173513 2531792 ~ 2532008 (-) True G406715
TU467152 lncRNA downstream 610165 2095043 ~ 2095356 (-) True G406551
TU467140 lncRNA downstream 647635 2057670 ~ 2057886 (-) True G406539
TU465524 lncRNA downstream 675084 2030201 ~ 2030437 (-) True G405068
TU465523 lncRNA downstream 675470 2029605 ~ 2030051 (-) True G405067
TU467401 lncRNA upstream 13521 2720213 ~ 2720548 (-) True G406772
TU467410 lncRNA upstream 122525 2829217 ~ 2829455 (-) True G406779
TU467418 lncRNA upstream 214618 2921310 ~ 2922385 (-) True G406786
TU467422 lncRNA upstream 222648 2929340 ~ 2929549 (-) True G406790
TU467475 lncRNA upstream 351014 3057706 ~ 3058006 (-) True G406842
CI01000299_02670695_02682116.mRNA mRNA downstream 23405 2670596 ~ 2682116 (-) True CI01000299_02670695_02682116
CI01000299_01693958_01696561.mRNA mRNA downstream 1008216 1692924 ~ 1697305 (-) True CI01000299_01693958_01696561
CI01000299_01419938_01421048.mRNA mRNA downstream 1284473 1419529 ~ 1421048 (-) True CI01000299_01419938_01421048
CI01000299_01338052_01368900.mRNA mRNA downstream 1336145 1337872 ~ 1369376 (-) True CI01000299_01338052_01368900
CI01000299_01222994_01268707.mRNA mRNA downstream 1435195 1222859 ~ 1270326 (-) True CI01000299_01222994_01268707
CI01000299_02723315_02728716.mRNA mRNA upstream 16528 2723220 ~ 2728753 (-) True CI01000299_02723315_02728716
CI01000299_02761916_02788258.mRNA mRNA upstream 54722 2761414 ~ 2788437 (-) True CI01000299_02761916_02788258
CI01000299_02833341_02845817.mRNA mRNA upstream 126398 2833090 ~ 2845870 (-) True CI01000299_02833341_02845817
CI01000299_02850281_02876863.mRNA mRNA upstream 143589 2850281 ~ 2876863 (-) True CI01000299_02850281_02876863
CI01000299_02891830_02905146.mRNA mRNA upstream 184882 2891574 ~ 2905146 (-) True CI01000299_02891830_02905146
TU465509 other downstream 687471 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 824533 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1045521 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 1629630 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2032665 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 1434426 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 1769302 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 2219276 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 2734645 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 3111877 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile