RNA id: TU465873



Basic Information


Item Value
RNA id TU465873
length 463
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G405385
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 2720862 ~ 2721324 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ACCCTTTCATGGAAACGGTATTCCCTGGTGGCTGTGGCCTCTTGCAGCAGGATAATGCGCCCTGCCACAAAGCAAAAATGGTTCAGGAATGATTTGAGGAGCACAACAACAAGTTTGAGGTGTCTACTTGGCCTCCAAATTCCCCAGATCTCAATCCAATCGAGCATCTGTGGGATGTGCTGAACAAACAAGTCCGATCCATGGAGGCTCCACCTCGCAACTTACAGGACTTAAAGGATCTGCTGCTAACATCTTGGTGCCAGATACCACAGCACACCTTCAGGGGTCTAGTGGAGTCCATTCCTTGACGGGTCAGGGCTGTTTTGGCAGCAAAAGGGGGACCAACACAATATTAGGAAGGTGGTCATAATGTTATGCCTGATCGGTGTGTGTGTATGTATATATATGAGTTTATCCAAATAGGCCTATTATCTGAACATGTGTTGATGCCTCTGAAGGGAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU465801 lncRNA upstream 5721 2659354 ~ 2715141 (+) True G405329
TU465854 lncRNA upstream 65449 2655180 ~ 2655413 (+) True G405366
TU465853 lncRNA upstream 67246 2653406 ~ 2653616 (+) True G405365
TU465852 lncRNA upstream 67709 2652908 ~ 2653153 (+) True G405364
TU465850 lncRNA upstream 76009 2644549 ~ 2644853 (+) True G405362
TU465878 lncRNA downstream 8949 2730273 ~ 2730509 (+) True G405390
TU465895 lncRNA downstream 89128 2810452 ~ 2810672 (+) True G405407
TU466103 lncRNA downstream 487602 3208926 ~ 3209411 (+) True G405611
TU466111 lncRNA downstream 599200 3320524 ~ 3321012 (+) True G405618
TU466112 lncRNA downstream 599871 3321195 ~ 3321433 (+) True G405619
CI01000299_02706136_02711943.mRNA mRNA upstream 7122 2705873 ~ 2713740 (+) True CI01000299_02706136_02711943
CI01000299_02696797_02704180.mRNA mRNA upstream 16642 2696632 ~ 2704220 (+) True CI01000299_02696797_02704180
CI01000299_02612562_02613926.mRNA mRNA upstream 106070 2612499 ~ 2614792 (+) True CI01000299_02612562_02613926
CI01000299_02195854_02198465.mRNA mRNA upstream 521937 2195798 ~ 2198925 (+) True CI01000299_02195854_02198465
CI01000299_02118245_02120332.mRNA mRNA upstream 599004 2116861 ~ 2121858 (+) True CI01000299_02118245_02120332
CI01000299_02753238_02760499.mRNA mRNA downstream 31914 2753238 ~ 2760953 (+) True CI01000299_02753238_02760499
CI01000299_02813216_02818668.mRNA mRNA downstream 91817 2813141 ~ 2819096 (+) True CI01000299_02813216_02818668
CI01000299_03144958_03149338.mRNA mRNA downstream 423066 3144390 ~ 3149340 (+) True CI01000299_03144958_03149338
CI01000299_03157191_03166687.mRNA mRNA downstream 435867 3157191 ~ 3166701 (+) True CI01000299_03157191_03166687
CI01000299_03170577_03174986.mRNA mRNA downstream 449253 3170577 ~ 3175003 (+) True CI01000299_03170577_03174986
TU464370 other upstream 2114512 604870 ~ 606350 (+) True G403972
TU463930 other upstream 2310074 364139 ~ 410788 (+) True G403609
TU463894 other upstream 2648591 35462 ~ 72271 (+) True G403578
TU466101 other downstream 433273 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 1409934 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 1574209 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 1768494 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 1981058 4702382 ~ 4702508 (+) True G405864

Expression Profile