RNA id: TU465895


Basic Information

Item Value
RNA id TU465895
length 221
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G405407
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 2810452 ~ 2810672 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACCTAATGACTACATTAAATGTACATAAGTGAATGTATACAGACAGCACAGCATTAACAAATAAAGTGCATGTTTGAATCAGGACATGCCAAGTGATATTTCACCAGGGTTATTTGTCATATTGACAAATCTGTGGATATCCAGCAGCGAATATATGTAGCTCCAACATTCATACAGTTTTTTCGTTGAGTAATTTCATTCAGTTAAGTCATGTTAATTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU465878 lncRNA upstream 79943 2730273 ~ 2730509 (+) True G405390
TU465873 lncRNA upstream 89128 2720862 ~ 2721324 (+) True G405385
TU465801 lncRNA upstream 95311 2659354 ~ 2715141 (+) True G405329
TU465854 lncRNA upstream 155039 2655180 ~ 2655413 (+) True G405366
TU465853 lncRNA upstream 156836 2653406 ~ 2653616 (+) True G405365
TU466103 lncRNA downstream 398254 3208926 ~ 3209411 (+) True G405611
TU466111 lncRNA downstream 509852 3320524 ~ 3321012 (+) True G405618
TU466112 lncRNA downstream 510523 3321195 ~ 3321433 (+) True G405619
TU466114 lncRNA downstream 523555 3334227 ~ 3335205 (+) True G405621
TU466154 lncRNA downstream 595913 3406585 ~ 3406810 (+) True G405660
CI01000299_02753238_02760499.mRNA mRNA upstream 49499 2753238 ~ 2760953 (+) True CI01000299_02753238_02760499
CI01000299_02706136_02711943.mRNA mRNA upstream 96712 2705873 ~ 2713740 (+) True CI01000299_02706136_02711943
CI01000299_02696797_02704180.mRNA mRNA upstream 106232 2696632 ~ 2704220 (+) True CI01000299_02696797_02704180
CI01000299_02612562_02613926.mRNA mRNA upstream 195660 2612499 ~ 2614792 (+) True CI01000299_02612562_02613926
CI01000299_02195854_02198465.mRNA mRNA upstream 611527 2195798 ~ 2198925 (+) True CI01000299_02195854_02198465
CI01000299_02813216_02818668.mRNA mRNA downstream 2469 2813141 ~ 2819096 (+) True CI01000299_02813216_02818668
CI01000299_03144958_03149338.mRNA mRNA downstream 333718 3144390 ~ 3149340 (+) True CI01000299_03144958_03149338
CI01000299_03157191_03166687.mRNA mRNA downstream 346519 3157191 ~ 3166701 (+) True CI01000299_03157191_03166687
CI01000299_03170577_03174986.mRNA mRNA downstream 359905 3170577 ~ 3175003 (+) True CI01000299_03170577_03174986
CI01000299_03176677_03185710.mRNA mRNA downstream 366005 3176677 ~ 3186067 (+) True CI01000299_03176677_03185710
TU464370 other upstream 2204102 604870 ~ 606350 (+) True G403972
TU463930 other upstream 2399664 364139 ~ 410788 (+) True G403609
TU463894 other upstream 2738181 35462 ~ 72271 (+) True G403578
TU466101 other downstream 343925 3154597 ~ 3155174 (+) True G405609
TU466041 other downstream 1320586 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 1484861 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 1679146 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 1891710 4702382 ~ 4702508 (+) True G405864

Expression Profile