RNA id: TU467422



Basic Information


Item Value
RNA id TU467422
length 210
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G406790
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 2929340 ~ 2929549 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCCTATTTTAACAATCTAAACTCATGGTCTGAAGCGCATGGCACAGGTGCCCTTAGGGCGTGTCTGAATCCACTTTTGCTAGTTTAATGATGGAAAAAATGGTTGGTGCACTAGGCGCATGGTCTAGTCTCTTAATGAGTCATGGGTGTGTTTTGGGCGTAACGTGCAATAAACCAATCAGAGTCTCATCTCCCATTCCCTTTAAAAGCC

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU467418 lncRNA downstream 6955 2921310 ~ 2922385 (-) True G406786
TU467410 lncRNA downstream 99885 2829217 ~ 2829455 (-) True G406779
TU467401 lncRNA downstream 208792 2720213 ~ 2720548 (-) True G406772
TU467243 lncRNA downstream 222648 2705521 ~ 2706692 (-) True G406630
TU467344 lncRNA downstream 397332 2531792 ~ 2532008 (-) True G406715
TU467475 lncRNA upstream 128157 3057706 ~ 3058006 (-) True G406842
TU467504 lncRNA upstream 191448 3120997 ~ 3121253 (-) True G406868
TU467520 lncRNA upstream 225051 3154600 ~ 3155118 (-) True G406884
TU467492 lncRNA upstream 228847 3158396 ~ 3204366 (-) True G406858
TU467526 lncRNA upstream 236982 3166531 ~ 3169255 (-) True G406889
CI01000299_02891830_02905146.mRNA mRNA downstream 24194 2891574 ~ 2905146 (-) True CI01000299_02891830_02905146
CI01000299_02850281_02876863.mRNA mRNA downstream 52477 2850281 ~ 2876863 (-) True CI01000299_02850281_02876863
CI01000299_02833341_02845817.mRNA mRNA downstream 83470 2833090 ~ 2845870 (-) True CI01000299_02833341_02845817
CI01000299_02761916_02788258.mRNA mRNA downstream 140903 2761414 ~ 2788437 (-) True CI01000299_02761916_02788258
CI01000299_02723315_02728716.mRNA mRNA downstream 200587 2723220 ~ 2728753 (-) True CI01000299_02723315_02728716
CI01000299_02951402_03057288.mRNA mRNA upstream 21853 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_03104921_03106385.mRNA mRNA upstream 175056 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_03206204_03214303.mRNA mRNA upstream 276636 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03341031_03366645.mRNA mRNA upstream 411217 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03492360_03492614.mRNA mRNA upstream 562665 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
TU465509 other downstream 911290 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 1048352 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1269340 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 1853449 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2256484 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 1211569 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 1546445 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 1996419 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 2511788 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 2889020 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile