RNA id: TU467475


Basic Information

Item Value
RNA id TU467475
length 225
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G406842
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3057706 ~ 3058006 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCCATCCATCCATCCACCAACCTACCCATCCATCCATGTGGTCATCCAGCCCTGCACAGTTTTGCTCCAACCCTAATTAAACACACCTGATCCAGCTAATCAATGTCGTCAGGATTACTAGAAACTTCCAAGCAGGTGTGAGTTTGAGCTGGTTGAAGCTAAACTCTGCAAGGCTGTGGCCCTCCAGAAGTTTGAGTTTGAGACCACTGATCGTCCGTCCATCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467422 lncRNA downstream 128157 2929340 ~ 2929549 (-) True G406790
TU467418 lncRNA downstream 135321 2921310 ~ 2922385 (-) True G406786
TU467410 lncRNA downstream 228251 2829217 ~ 2829455 (-) True G406779
TU467401 lncRNA downstream 337158 2720213 ~ 2720548 (-) True G406772
TU467243 lncRNA downstream 351014 2705521 ~ 2706692 (-) True G406630
TU467504 lncRNA upstream 62991 3120997 ~ 3121253 (-) True G406868
TU467520 lncRNA upstream 96594 3154600 ~ 3155118 (-) True G406884
TU467492 lncRNA upstream 100390 3158396 ~ 3204366 (-) True G406858
TU467526 lncRNA upstream 108525 3166531 ~ 3169255 (-) True G406889
TU467508 lncRNA upstream 116367 3174373 ~ 3175921 (-) True G406872
CI01000299_02951402_03057288.mRNA mRNA downstream 418 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_02891830_02905146.mRNA mRNA downstream 152560 2891574 ~ 2905146 (-) True CI01000299_02891830_02905146
CI01000299_02850281_02876863.mRNA mRNA downstream 180843 2850281 ~ 2876863 (-) True CI01000299_02850281_02876863
CI01000299_02833341_02845817.mRNA mRNA downstream 211836 2833090 ~ 2845870 (-) True CI01000299_02833341_02845817
CI01000299_02761916_02788258.mRNA mRNA downstream 269269 2761414 ~ 2788437 (-) True CI01000299_02761916_02788258
CI01000299_03104921_03106385.mRNA mRNA upstream 46599 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_03206204_03214303.mRNA mRNA upstream 148179 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03341031_03366645.mRNA mRNA upstream 282760 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03492360_03492614.mRNA mRNA upstream 434208 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_04136702_04142005.mRNA mRNA upstream 1076814 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
TU465509 other downstream 1039656 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 1176718 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1397706 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 1981815 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2384850 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 1083112 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 1417988 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 1867962 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 2383331 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 2760563 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile