RNA id: TU466101



Basic Information


Item Value
RNA id TU466101
length 578
RNA type TUCP
GC content 0.50
exon number 1
gene id G405609
representative True

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3154597 ~ 3155174 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGGGAGCGAAGGCTGGCCTGTGTGGTTCGATCCAACACATGACACCAGGATGCACTATGGGAAGAAGGCAAGCTGGCGGAGGCAGTGTGATGCTTTGGGCAATGTTCTGCTGGGAAACCTTGATCCATGTAGATGTTACTTTGACACGTACCACCTACCTAAGCATTGTTGCAGACCATGTACACCCTTTCATGGAAACGGTATTCCCTGGTGGCTGTGGCCTCTTTCAGCAGGATAATGCGCCCTGCCACAAAGCAAAAATGGTTCAGGAATGGTTTGAGGAGCACAACAACAAGTTTGAGGTGTTGACTTGGCCTCCAAATTCCCCAGATCTCAATCCAATCGAGCATCTGTGGGATGTGCTGAACAAACAAGTCCGATCCATGGAGGCTCCACCTCGCAACTTACAGGACTTAAATGATCTGCTGCTAACATCTTGGTGCCAGATACCACAGCACACCTTCAGGGGTCTAGTGGAGTCCATGCCTCGACAGGTCAGGGCTGTTTTGGCAGCAAAAGGGGGACCAACACAATATTTGGAAGGTGGTCATAATGTTATGCCTGATCGGTGTATATAT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU465895 lncRNA upstream 343925 2810452 ~ 2810672 (+) True G405407
TU465878 lncRNA upstream 424088 2730273 ~ 2730509 (+) True G405390
TU465873 lncRNA upstream 433273 2720862 ~ 2721324 (+) True G405385
TU465801 lncRNA upstream 439456 2659354 ~ 2715141 (+) True G405329
TU465854 lncRNA upstream 499184 2655180 ~ 2655413 (+) True G405366
TU466103 lncRNA downstream 53752 3208926 ~ 3209411 (+) True G405611
TU466111 lncRNA downstream 165350 3320524 ~ 3321012 (+) True G405618
TU466112 lncRNA downstream 166021 3321195 ~ 3321433 (+) True G405619
TU466114 lncRNA downstream 179053 3334227 ~ 3335205 (+) True G405621
TU466154 lncRNA downstream 251411 3406585 ~ 3406810 (+) True G405660
CI01000299_03144958_03149338.mRNA mRNA upstream 5257 3144390 ~ 3149340 (+) True CI01000299_03144958_03149338
CI01000299_02813216_02818668.mRNA mRNA upstream 335501 2813141 ~ 2819096 (+) True CI01000299_02813216_02818668
CI01000299_02753238_02760499.mRNA mRNA upstream 393644 2753238 ~ 2760953 (+) True CI01000299_02753238_02760499
CI01000299_02706136_02711943.mRNA mRNA upstream 440857 2705873 ~ 2713740 (+) True CI01000299_02706136_02711943
CI01000299_02696797_02704180.mRNA mRNA upstream 450377 2696632 ~ 2704220 (+) True CI01000299_02696797_02704180
CI01000299_03157191_03166687.mRNA mRNA downstream 2017 3157191 ~ 3166701 (+) True CI01000299_03157191_03166687
CI01000299_03170577_03174986.mRNA mRNA downstream 15403 3170577 ~ 3175003 (+) True CI01000299_03170577_03174986
CI01000299_03176677_03185710.mRNA mRNA downstream 21503 3176677 ~ 3186067 (+) True CI01000299_03176677_03185710
CI01000299_03189537_03200831.mRNA mRNA downstream 34145 3189319 ~ 3201406 (+) True CI01000299_03189537_03200831
CI01000299_03215678_03230586.mRNA mRNA downstream 60504 3215678 ~ 3230586 (+) True CI01000299_03215678_03230586
TU464370 other upstream 2548247 604870 ~ 606350 (+) True G403972
TU463930 other upstream 2743809 364139 ~ 410788 (+) True G403609
TU463894 other upstream 3082326 35462 ~ 72271 (+) True G403578
TU466041 other downstream 976084 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 1140359 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 1334644 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 1547208 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 1769288 4924462 ~ 4927844 (+) True G406096

Expression Profile