RNA id: TU467520


Basic Information

Item Value
RNA id TU467520
length 519
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G406884
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3154600 ~ 3155118 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCCCTTTTGCTGCCAAAACAGCCCTGACCTGTCGAGGCATGGACTCCACTAGACCCCTGAAGGTGTGCTGTGGTATCTGGCACCAAGATGTTAGCAGCAGATCATTTAAGTCCTGTAAGTTGCGAGGTGGAGCCTCCATGGATCGGACTTGTTTGTTCAGCACATCCCACAGATGCTCGATTGGATTGAGATCTGGGGAATTTGGAGGCCAAGTCAACACCTCAAACTTGTTGTTGTGCTCCTCAAACCATTCCTGAACCATTTTTGCTTTGTGGCAGGGCGCATTATCCTGCTGAAAGAGGCCACAGCCACCAGGGAATACCGTTTCCATGAAAGGGTGTACATGGTCTGCAACAATGCTTAGGTAGGTGGTACGTGTCAAAGTAACATCTACATGGATCAAGGTTTCCCAGCAGAACATTGCCCAAAGCATCACACTGCCTCCGCCAGCTTGCCTTCTTCCCATAGTGCATCCTGGTGTCATGTGTTGGATCGAACCACACAGGCCAGCCTTCGCTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467504 lncRNA downstream 33347 3120997 ~ 3121253 (-) True G406868
TU467475 lncRNA downstream 96594 3057706 ~ 3058006 (-) True G406842
TU467422 lncRNA downstream 225051 2929340 ~ 2929549 (-) True G406790
TU467418 lncRNA downstream 232215 2921310 ~ 2922385 (-) True G406786
TU467410 lncRNA downstream 325145 2829217 ~ 2829455 (-) True G406779
TU467492 lncRNA upstream 3278 3158396 ~ 3204366 (-) True G406858
TU467526 lncRNA upstream 11413 3166531 ~ 3169255 (-) True G406889
TU467508 lncRNA upstream 19255 3174373 ~ 3175921 (-) True G406872
TU467498 lncRNA upstream 41175 3196293 ~ 3196999 (-) True G406862
TU467554 lncRNA upstream 84191 3239309 ~ 3239848 (-) True G406912
CI01000299_03104921_03106385.mRNA mRNA downstream 48215 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_02951402_03057288.mRNA mRNA downstream 97312 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_02891830_02905146.mRNA mRNA downstream 249454 2891574 ~ 2905146 (-) True CI01000299_02891830_02905146
CI01000299_02850281_02876863.mRNA mRNA downstream 277737 2850281 ~ 2876863 (-) True CI01000299_02850281_02876863
CI01000299_02833341_02845817.mRNA mRNA downstream 308730 2833090 ~ 2845870 (-) True CI01000299_02833341_02845817
CI01000299_03206204_03214303.mRNA mRNA upstream 51067 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03341031_03366645.mRNA mRNA upstream 185648 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03492360_03492614.mRNA mRNA upstream 337096 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_04136702_04142005.mRNA mRNA upstream 979702 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
CI01000299_04158468_04164223.mRNA mRNA upstream 1002883 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
TU465509 other downstream 1136550 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 1273612 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1494600 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 2078709 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2481744 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 986000 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 1320876 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 1770850 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 2286219 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 2663451 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile