RNA id: TU467526


Basic Information

Item Value
RNA id TU467526
length 2705
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G406889
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3166531 ~ 3169255 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAATATATGCATGTCTCTAGCTTTATTGTACAATAAAATACACAATTTTTTTTTCACAGACTTTAGCCATTCGGTCACAACTGAATTACTTTATCCAAGGCAAATTCTGTCAGTCTGTATCTCCATTAAAAAATGTAGTAGATTTTTTTTTTTTTTTTCCCCCATTTTTCTTTTTCAATGACTAAAAAAAAAACATCCCAATGGCTCATTTCAACCTTGTCCCCTGAGTTTAGTGTCAGTGCTATAAAGTGAGTGGTCTCCTTTGTCCCTTTGATGAACTGAAGTTGTACAGTACAGCAATATATTGCATCTAAGCAACAAGTACCACTCCACACGCACACACAGCATGAGAAAATACAATCTTTAAGCACACAAACGATCATAAAGAACGTAAAAAAGTCAGATGAATATGCACATAATGTCAGAAATTAACATTAAAATTGACTGACGATATAGATTTTCCCCTCTGCTTATAACATACTCCTAAATTCAAATTTAATCTTAGTCTGTACAGAAATTCAAATATCAGCATTAGTATGTACTGATATACAATGGCACCAGAAATATAATTATCCCTTTTCTAATTAAATAAAGCCTCAAAGTATACGATCATATTCACAATTACAAGCAGTTTTCCTATTGCAAAGAACAGCAAATCGGAAGCATCATAGAATCAATGCAACCACAGAAATTCACTTAAATAACAGAAAGTACATTCATCATAATAACGTCTCCGCAATGTATTGCCTAAAGTTGTAGATGTGGAGGGATTTATACAATGTAAAATAGCTGTCAGTCTTCTCTCATTAATAGTGATAGTATTTAGCATTATAAATGCACTTCGAAGGAAATGAGTGGAAAGCATGGAAGCTTGTTTCCGCCACGCAATAAAAAAAAAATAAATAAATAAAAGGAATAAATAAAAGATCTTTTTTTTTTCTCTCACAATTGCGAGTTTATATCTCGCAATTTTTACTTTTTTCTCAGAATTGTGATATAAAGTGCAATTGTGAGGGAAATTGCGTGATATGTCACAATTGTGAGTTTCAGAATTCTGACTTTTCTTCCTTGCAATTGCGAGTTTATATCTCACAATTCTGACTTCTTTTCTCAGAATTGGGAGATATAAACTCGCAATTGCGAGTTATAAACAAGCGGCAACCTCCCGCAGTCTCTCTTGAAACCAACATGGAAGTGACTCAAAGTGCAATTCATCGACTGGCCGCTAGAGACAGGCTCCAAAAGGGAGTCAAATCTGTATCTCCCCCATGTTAAAATGCCCAACTTTACAGCAGAAATAAATATGTTTACAGCCTGGTACAAAAAGTGGTTTGGGCACTGACTAAAAGTTTTGTCTGTCAGATTTACTACAATGATAATGGCTAGAGAATAGGCCTCTCAAGACACCACAAAATCCGACAGCACTGCTTGGATATTATAACTGAAACTGCTACACTATTTTGAAATTTTACCAAATTTTACCAAAAATTTACCAAAATTTACTTTGAATGCTGCCTAATTTGTTTGTGAGAGTCTAGTTCAGTTTTACAACATAAACGGTGCTCAGATTGCATAATTTCTTAAAGAATAATGACAGAGAGCAGAACGTTCTGAAGAAATATGACGCAAACAATGGGCAATATATCAATATTTCATTTGTGGACAAAAAGTGCTGTTGTCTGTTTTTCAATGGACGCTTATCATGGACATTTTACCAAAGTGCGACGGATTGGATTTATCTCGCAATCGCTATTTCATTACAAAGGTATGAAATACCGTTTTGATTTTGCAATATTGCTGTTGCTGGAGCATCTATATCGTAAAAGAGACACCGTAGATTGATCCTTAAAGTAGTAAACCCCTTAAAACTTTCAAATTAAGTATAATTTGTTATCTTTATTAATATTTTAGATAATATCTAAGATAGATAGATAGATAGCTCCTTAGCCTGAGCTAACTTGATCACGTCGCGCTAGGCGGGTGTGGTTTCAGCAACCAGGCACCTCAGCTCCACCCATGTCCCACCTCTTTGCCCATTTTCGGTTATCTGGGAGTGATGCACTGTGACGCGCTGCCAAGATGGCGACGGTCGGCTCCGCCCACTTTGGGCTTCAAAAATGCTCTTCAGAAACCTACGGGTGACGCCACGGACACTACGTCCATGTTTTATACAGTCTATGGTTATAAAGTCCAATTCTGAGGGAAAAAAGACTGACTTTTTCTCAGAATTGCAACTTTATATCACGCAATTCTGACTTTATAACTCGCAATTGCGAGTTTATATCAATTGCGAGAAGAAAAAAAAAGACAGAATTGCGAGATAAAAAGTCACAATTACTATTTTTATTTTTTATTCAGTGGCGGAAACAAGTGAATGCAAAGAAATATATATAAAAAAAAAAAATTCAAAAAAACTTTAAGGTCAGCAATAATCCTTTTAAGAACTACCAAAAACATAAAATATTAAATAATCATTCTAATATGCCAAAACAGCATTGGGCGAGCTTAAAGTGCACACAAAACCAGGTTTTATGTCCCATCATGTATCTAGTGTCCCTTGTGTCCTGTAGTGGATGTTTGTGGCTGTAGTTTCTCTGATTTCCTGTCTTTAGTCTCGCTGTCAGAGGCCGAGTCTGAATCCTGAACCTGCTGCTGTTTCTGCCACATGTCAGAGTACAGCCCTCCCTTCGCCAACAGCTCCTCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467520 lncRNA downstream 11413 3154600 ~ 3155118 (-) True G406884
TU467504 lncRNA downstream 45278 3120997 ~ 3121253 (-) True G406868
TU467475 lncRNA downstream 108525 3057706 ~ 3058006 (-) True G406842
TU467422 lncRNA downstream 236982 2929340 ~ 2929549 (-) True G406790
TU467418 lncRNA downstream 244146 2921310 ~ 2922385 (-) True G406786
TU467508 lncRNA upstream 5118 3174373 ~ 3175921 (-) True G406872
TU467498 lncRNA upstream 27038 3196293 ~ 3196999 (-) True G406862
TU467554 lncRNA upstream 70054 3239309 ~ 3239848 (-) True G406912
TU467578 lncRNA upstream 120207 3289462 ~ 3295137 (-) True G406932
TU467588 lncRNA upstream 134497 3303752 ~ 3305190 (-) True G406942
CI01000299_03104921_03106385.mRNA mRNA downstream 60146 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_02951402_03057288.mRNA mRNA downstream 109243 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_02891830_02905146.mRNA mRNA downstream 261385 2891574 ~ 2905146 (-) True CI01000299_02891830_02905146
CI01000299_02850281_02876863.mRNA mRNA downstream 289668 2850281 ~ 2876863 (-) True CI01000299_02850281_02876863
CI01000299_02833341_02845817.mRNA mRNA downstream 320661 2833090 ~ 2845870 (-) True CI01000299_02833341_02845817
CI01000299_03206204_03214303.mRNA mRNA upstream 36930 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03341031_03366645.mRNA mRNA upstream 171511 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03492360_03492614.mRNA mRNA upstream 322959 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_04136702_04142005.mRNA mRNA upstream 965565 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
CI01000299_04158468_04164223.mRNA mRNA upstream 988746 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
TU465509 other downstream 1148481 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 1285543 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1506531 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 2090640 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2493675 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 971863 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 1306739 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 1756713 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 2272082 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 2649314 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile