RNA id: TU467578


Basic Information

Item Value
RNA id TU467578
length 379
lncRNA type antisense_over
GC content 0.57
exon number 2
gene id G406932
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3289462 ~ 3295137 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGGGTGATGTCATGACGCACTGAGGGAAGAGAACGCACTGGCTGATGGCCGTTCACTTGAGCACAGGCTCCTGTCTCTCCATCTGTTAGCGTGGCAGCCTGTGCTGCGTCAGCTGCCCCTCTCGCTTCATTGGTTAATTCCATCGCTTCAGCCTGTGATGCGTTTCCTGATGCTTGCAGACTCCGCCTCCTCTGCCAGATTTCAGCATCTTCTTCCTCCTCATTGGCTGCCTCACTGGAGTTCCCCTGCTCTGGCTGCTTAGCTGCTGTGGCTCCGCCTCCTTCACCAGCTGCATTACTGCCAGATGCTGAGGGCTCTGTGACTGCAGCAGCCTCTGTTGATCCTTCATCCCTAGTGACCGCCTTGGATGCAACTCCTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467554 lncRNA downstream 49614 3239309 ~ 3239848 (-) True G406912
TU467492 lncRNA downstream 85096 3158396 ~ 3204366 (-) True G406858
TU467498 lncRNA downstream 92463 3196293 ~ 3196999 (-) True G406862
TU467508 lncRNA downstream 113541 3174373 ~ 3175921 (-) True G406872
TU467526 lncRNA downstream 120207 3166531 ~ 3169255 (-) True G406889
TU467588 lncRNA upstream 8615 3303752 ~ 3305190 (-) True G406942
TU467587 lncRNA upstream 17246 3312383 ~ 3316446 (-) True G406941
TU467571 lncRNA upstream 38906 3334043 ~ 3335207 (-) True G406927
TU467573 lncRNA upstream 78783 3373920 ~ 3401249 (-) True G406928
TU467617 lncRNA upstream 119866 3415003 ~ 3415287 (-) True G406971
CI01000299_03206204_03214303.mRNA mRNA downstream 75159 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03104921_03106385.mRNA mRNA downstream 183077 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_02951402_03057288.mRNA mRNA downstream 232174 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_02891830_02905146.mRNA mRNA downstream 384316 2891574 ~ 2905146 (-) True CI01000299_02891830_02905146
CI01000299_02850281_02876863.mRNA mRNA downstream 412599 2850281 ~ 2876863 (-) True CI01000299_02850281_02876863
CI01000299_03341031_03366645.mRNA mRNA upstream 45629 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03492360_03492614.mRNA mRNA upstream 197077 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_04136702_04142005.mRNA mRNA upstream 839683 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
CI01000299_04158468_04164223.mRNA mRNA upstream 862864 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
CI01000299_04171373_04175441.mRNA mRNA upstream 876012 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
TU465509 other downstream 1271412 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 1408474 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1629462 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 2213571 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2616606 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 845981 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 1180857 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 1630831 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 2146200 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 2523432 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile