RNA id: TU466112


Basic Information

Item Value
RNA id TU466112
length 239
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G405619
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3321195 ~ 3321433 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGCTCTTGACTGAATAACTTTAGTAGCTCTAATAAGAATACAGTTCTGACTTGAATGCTGCTGTTAAATGCTCTAGTGAGGAGATAAACATGGCGGACTGTGTACAGCTCACTCAGGGGAGGAGCTAAGCTAATAGGGCGGAGTCTGTAATGCAATCATGGGCGGGGCCTGAGGAATGCGATGTCACATTGCATAGAAACTGCAAACGGCTTATTCTGAGACACTGCTTATGATTTAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466111 lncRNA upstream 183 3320524 ~ 3321012 (+) True G405618
TU466103 lncRNA upstream 111784 3208926 ~ 3209411 (+) True G405611
TU465895 lncRNA upstream 510523 2810452 ~ 2810672 (+) True G405407
TU465878 lncRNA upstream 590686 2730273 ~ 2730509 (+) True G405390
TU465873 lncRNA upstream 599871 2720862 ~ 2721324 (+) True G405385
TU466114 lncRNA downstream 12794 3334227 ~ 3335205 (+) True G405621
TU466154 lncRNA downstream 85152 3406585 ~ 3406810 (+) True G405660
TU466157 lncRNA downstream 89101 3410534 ~ 3410764 (+) True G405663
TU466184 lncRNA downstream 140945 3462378 ~ 3462582 (+) True G405690
TU466187 lncRNA downstream 146085 3467518 ~ 3467780 (+) True G405693
CI01000299_03268500_03312490.mRNA mRNA upstream 7867 3268193 ~ 3313328 (+) True CI01000299_03268500_03312490
CI01000299_03267154_03267336.mRNA mRNA upstream 53804 3267154 ~ 3267391 (+) True CI01000299_03267154_03267336
CI01000299_03237334_03244737.mRNA mRNA upstream 76380 3237334 ~ 3244815 (+) True CI01000299_03237334_03244737
CI01000299_03215678_03230586.mRNA mRNA upstream 90609 3215678 ~ 3230586 (+) True CI01000299_03215678_03230586
CI01000299_03189537_03200831.mRNA mRNA upstream 119789 3189319 ~ 3201406 (+) True CI01000299_03189537_03200831
CI01000299_03366963_03373293.mRNA mRNA downstream 45385 3366818 ~ 3373682 (+) True CI01000299_03366963_03373293
CI01000299_03382616_03423028.mRNA mRNA downstream 61058 3382491 ~ 3423697 (+) True CI01000299_03382616_03423028
CI01000299_03453437_03453736.mRNA mRNA downstream 130867 3452300 ~ 3454209 (+) True CI01000299_03453437_03453736
CI01000299_03478949_03486009.mRNA mRNA downstream 154655 3476088 ~ 3486009 (+) False CI01000299_03478949_03486009
CI01000299_03495286_03498691.mRNA mRNA downstream 173106 3494539 ~ 3498729 (+) True CI01000299_03495286_03498691
TU466101 other upstream 166021 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 2714845 604870 ~ 606350 (+) True G403972
TU463930 other upstream 2910407 364139 ~ 410788 (+) True G403609
TU463894 other upstream 3248924 35462 ~ 72271 (+) True G403578
TU466041 other downstream 809825 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 974100 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 1168385 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 1380949 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 1603029 4924462 ~ 4927844 (+) True G406096

Expression Profile