RNA id: TU466154


Basic Information

Item Value
RNA id TU466154
length 226
lncRNA type intronic
GC content 0.47
exon number 1
gene id G405660
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3406585 ~ 3406810 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTCTGGTGTCCCCAGAATGTGTCTGTGAAGTTCCAGCTCAAAATACCCCACAGATCATTTATTATAGCTTGTCAAATTTGCCCCTATTTGGGTGTGAGCAAAAACACACTGTTTGTGTGTGTCCCTTTAAATGCAAATGAGCAGCTGCTCCCGGCCCCCTTTCCAGAAGAGGGCGGAGCTTTAACAGTTTGCGCTTCGGTTGCTCAACACCAACAAAACTGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466114 lncRNA upstream 71380 3334227 ~ 3335205 (+) True G405621
TU466112 lncRNA upstream 85152 3321195 ~ 3321433 (+) True G405619
TU466111 lncRNA upstream 85573 3320524 ~ 3321012 (+) True G405618
TU466103 lncRNA upstream 197174 3208926 ~ 3209411 (+) True G405611
TU465895 lncRNA upstream 595913 2810452 ~ 2810672 (+) True G405407
TU466157 lncRNA downstream 3724 3410534 ~ 3410764 (+) True G405663
TU466184 lncRNA downstream 55568 3462378 ~ 3462582 (+) True G405690
TU466187 lncRNA downstream 60708 3467518 ~ 3467780 (+) True G405693
TU466189 lncRNA downstream 62187 3468997 ~ 3469199 (+) True G405695
TU466191 lncRNA downstream 65565 3472375 ~ 3472615 (+) True G405697
CI01000299_03366963_03373293.mRNA mRNA upstream 32903 3366818 ~ 3373682 (+) True CI01000299_03366963_03373293
CI01000299_03268500_03312490.mRNA mRNA upstream 93257 3268193 ~ 3313328 (+) True CI01000299_03268500_03312490
CI01000299_03267154_03267336.mRNA mRNA upstream 139194 3267154 ~ 3267391 (+) True CI01000299_03267154_03267336
CI01000299_03237334_03244737.mRNA mRNA upstream 161770 3237334 ~ 3244815 (+) True CI01000299_03237334_03244737
CI01000299_03215678_03230586.mRNA mRNA upstream 175999 3215678 ~ 3230586 (+) True CI01000299_03215678_03230586
CI01000299_03453437_03453736.mRNA mRNA downstream 45490 3452300 ~ 3454209 (+) True CI01000299_03453437_03453736
CI01000299_03478949_03486009.mRNA mRNA downstream 69278 3476088 ~ 3486009 (+) False CI01000299_03478949_03486009
CI01000299_03495286_03498691.mRNA mRNA downstream 87729 3494539 ~ 3498729 (+) True CI01000299_03495286_03498691
CI01000299_03594891_03678552.mRNA mRNA downstream 188081 3594891 ~ 3679612 (+) True CI01000299_03594891_03678552
CI01000299_03981006_04059237.mRNA mRNA downstream 574196 3981006 ~ 4059237 (+) True CI01000299_03981006_04059237
TU466101 other upstream 251411 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 2800235 604870 ~ 606350 (+) True G403972
TU463930 other upstream 2995797 364139 ~ 410788 (+) True G403609
TU463894 other upstream 3334314 35462 ~ 72271 (+) True G403578
TU466041 other downstream 724448 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 888723 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 1083008 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 1295572 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 1517652 4924462 ~ 4927844 (+) True G406096

Expression Profile