RNA id: TU466157


Basic Information

Item Value
RNA id TU466157
length 231
lncRNA type intronic
GC content 0.54
exon number 1
gene id G405663
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3410534 ~ 3410764 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCTCATCTGTTGGATTGGACCACACGGGCCAGCCTTCGCTCCCCACGTTCATCAATGAGCCTTGGCCGCCCATTCACCACTGTTCCTTCCTTGGACCACTTTTGATAGATACTGACCACTGCAGACCGGGAACACCCCACAAGAGCTGCAGTTTTGGAGATGCTCTGACCCAGTCGTCTAGCCATCACAATTTGGCCCTTGTCAGACTCGCTCAAATCCTTATGCTTGCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466154 lncRNA upstream 3724 3406585 ~ 3406810 (+) True G405660
TU466114 lncRNA upstream 75329 3334227 ~ 3335205 (+) True G405621
TU466112 lncRNA upstream 89101 3321195 ~ 3321433 (+) True G405619
TU466111 lncRNA upstream 89522 3320524 ~ 3321012 (+) True G405618
TU466103 lncRNA upstream 201123 3208926 ~ 3209411 (+) True G405611
TU466184 lncRNA downstream 51614 3462378 ~ 3462582 (+) True G405690
TU466187 lncRNA downstream 56754 3467518 ~ 3467780 (+) True G405693
TU466189 lncRNA downstream 58233 3468997 ~ 3469199 (+) True G405695
TU466191 lncRNA downstream 61611 3472375 ~ 3472615 (+) True G405697
TU466194 lncRNA downstream 66825 3477589 ~ 3477816 (+) True CI01000299_03478949_03486009
CI01000299_03366963_03373293.mRNA mRNA upstream 36852 3366818 ~ 3373682 (+) True CI01000299_03366963_03373293
CI01000299_03268500_03312490.mRNA mRNA upstream 97206 3268193 ~ 3313328 (+) True CI01000299_03268500_03312490
CI01000299_03267154_03267336.mRNA mRNA upstream 143143 3267154 ~ 3267391 (+) True CI01000299_03267154_03267336
CI01000299_03237334_03244737.mRNA mRNA upstream 165719 3237334 ~ 3244815 (+) True CI01000299_03237334_03244737
CI01000299_03215678_03230586.mRNA mRNA upstream 179948 3215678 ~ 3230586 (+) True CI01000299_03215678_03230586
CI01000299_03453437_03453736.mRNA mRNA downstream 41536 3452300 ~ 3454209 (+) True CI01000299_03453437_03453736
CI01000299_03478949_03486009.mRNA mRNA downstream 65324 3476088 ~ 3486009 (+) False CI01000299_03478949_03486009
CI01000299_03495286_03498691.mRNA mRNA downstream 83775 3494539 ~ 3498729 (+) True CI01000299_03495286_03498691
CI01000299_03594891_03678552.mRNA mRNA downstream 184127 3594891 ~ 3679612 (+) True CI01000299_03594891_03678552
CI01000299_03981006_04059237.mRNA mRNA downstream 570242 3981006 ~ 4059237 (+) True CI01000299_03981006_04059237
TU466101 other upstream 255360 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 2804184 604870 ~ 606350 (+) True G403972
TU463930 other upstream 2999746 364139 ~ 410788 (+) True G403609
TU463894 other upstream 3338263 35462 ~ 72271 (+) True G403578
TU466041 other downstream 720494 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 884769 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 1079054 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 1291618 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 1513698 4924462 ~ 4927844 (+) True G406096

Expression Profile