RNA id: TU467624


Basic Information

Item Value
RNA id TU467624
length 219
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G406978
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3436787 ~ 3437005 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTCTTTCCCGTGAACGTCTTGAATCTGCTGATTAATTACAACTGTTTGGAAAACTGTGCTAAAGCGAGTCTGGATAGAGAAGGGGATGGTTAGGCAAATCCATAGCCAGAGACTGTTGCCACAGTTGGCCAAAAAAAAAAAAAAAACTAGCCAATCGCCATTGAGTATTTGAATTTCAGTGGTTAGTGTGTTAGAGAAAATATACAACTCAAACTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467618 lncRNA downstream 18465 3418084 ~ 3418322 (-) True G406972
TU467617 lncRNA downstream 21500 3415003 ~ 3415287 (-) True G406971
TU467573 lncRNA downstream 35538 3373920 ~ 3401249 (-) True G406928
TU467571 lncRNA downstream 101580 3334043 ~ 3335207 (-) True G406927
TU467587 lncRNA downstream 120341 3312383 ~ 3316446 (-) True G406941
TU467628 lncRNA upstream 5083 3442088 ~ 3442324 (-) True G406982
TU467653 lncRNA upstream 25696 3462701 ~ 3462913 (-) True G407005
TU467659 lncRNA upstream 30254 3467259 ~ 3467752 (-) True G407011
TU467660 lncRNA upstream 32086 3469091 ~ 3469378 (-) True G407012
TU467663 lncRNA upstream 35116 3472121 ~ 3472623 (-) True G407015
CI01000299_03341031_03366645.mRNA mRNA downstream 70059 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03206204_03214303.mRNA mRNA downstream 222484 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03104921_03106385.mRNA mRNA downstream 330402 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_02951402_03057288.mRNA mRNA downstream 379499 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_02891830_02905146.mRNA mRNA downstream 531641 2891574 ~ 2905146 (-) True CI01000299_02891830_02905146
CI01000299_03492360_03492614.mRNA mRNA upstream 55209 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_04136702_04142005.mRNA mRNA upstream 697815 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
CI01000299_04158468_04164223.mRNA mRNA upstream 720996 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
CI01000299_04171373_04175441.mRNA mRNA upstream 734144 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
CI01000299_04186183_04196219.mRNA mRNA upstream 747962 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
TU465509 other downstream 1418737 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 1555799 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1776787 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 2360896 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2763931 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 704113 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 1038989 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 1488963 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 2004332 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 2381564 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile