RNA id: TU467663


Basic Information

Item Value
RNA id TU467663
length 503
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G407015
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3472121 ~ 3472623 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGAGAGTAGACGCCTCTCACGATTCAAACAAATAGGACTGGGCAACAAACTCAAGCTCCTCTTCTCATATATTGAAATCCTCTGGTATTTCTCTTTAAAAATTCTCATTTTAGACTTCTAATTCGTGACTGGTGTTTTGTTTTGCTCTATCCTCTGTGCTTCCATGTACGTCATGCGTCGGGTCAGAGGTCACTCTTCCACTGAAACTAGACTCACGTACGGCCATTGCCAGAAGCCAGTGATTATAGTTTATAAAGTTTTAAATATGGATATTTTTCTTACAAAAACCCATCACTTCGCTTCAGAAGGCCTTTATTAACCCCCTGGAGCTGTATGGATTACTTTTATGATTGATGGATGTGCTTTTTTGGGCTTCAAAATCTCGGATACCATTCACTCCCATTATAAAGCTTGGAAGAGTTAGGATATTTTTTTAATATAACTCAGATTGTGTTCGGCTGAACGAAGAAAGTCATACACTATGCTGCACGATTTATTGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467660 lncRNA downstream 2743 3469091 ~ 3469378 (-) True G407012
TU467659 lncRNA downstream 4369 3467259 ~ 3467752 (-) True G407011
TU467653 lncRNA downstream 9208 3462701 ~ 3462913 (-) True G407005
TU467628 lncRNA downstream 29797 3442088 ~ 3442324 (-) True G406982
TU467624 lncRNA downstream 35116 3436787 ~ 3437005 (-) True G406978
TU467668 lncRNA upstream 2907 3475530 ~ 3475796 (-) True G407020
TU467671 lncRNA upstream 4977 3477600 ~ 3477984 (-) True G407023
TU467640 lncRNA upstream 8476 3481099 ~ 3481542 (-) True G406993
TU467679 lncRNA upstream 32283 3504906 ~ 3560018 (-) True G407030
TU467763 lncRNA upstream 159798 3632421 ~ 3634581 (-) True G407112
CI01000299_03341031_03366645.mRNA mRNA downstream 105393 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03206204_03214303.mRNA mRNA downstream 257818 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03104921_03106385.mRNA mRNA downstream 365736 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_02951402_03057288.mRNA mRNA downstream 414833 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_02891830_02905146.mRNA mRNA downstream 566975 2891574 ~ 2905146 (-) True CI01000299_02891830_02905146
CI01000299_03492360_03492614.mRNA mRNA upstream 19591 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_04136702_04142005.mRNA mRNA upstream 662197 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
CI01000299_04158468_04164223.mRNA mRNA upstream 685378 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
CI01000299_04171373_04175441.mRNA mRNA upstream 698526 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
CI01000299_04186183_04196219.mRNA mRNA upstream 712344 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
TU465509 other downstream 1454071 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 1591133 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1812121 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 2396230 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2799265 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 668495 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 1003371 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 1453345 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 1968714 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 2345946 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile