RNA id: TU467668


Basic Information

Item Value
RNA id TU467668
length 267
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G407020
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3475530 ~ 3475796 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAGGAAGCTGGTCACCGGGCAGCCAATTCCCTAAGCCGCACGGGTTTAAGGGTTTTAATTATTCATTGGTCACACGTCTGGTCCATACACGAATCAATCAGACCAGCCTGTGTTTGGATGGGTTTATAGGTGTCAGGGCAGAGAGGCCTGGACCCGTGTACCTCAGCACTGCTCAGCCCTGCAGATAAAATCAATCACTGCTGATCACATCAGTATTTGCATCCAATGCCACACCTGTCAGAGAAACACACACACACAGAGAGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467663 lncRNA downstream 2907 3472121 ~ 3472623 (-) True G407015
TU467660 lncRNA downstream 6152 3469091 ~ 3469378 (-) True G407012
TU467659 lncRNA downstream 7778 3467259 ~ 3467752 (-) True G407011
TU467653 lncRNA downstream 12617 3462701 ~ 3462913 (-) True G407005
TU467628 lncRNA downstream 33206 3442088 ~ 3442324 (-) True G406982
TU467671 lncRNA upstream 1804 3477600 ~ 3477984 (-) True G407023
TU467640 lncRNA upstream 5303 3481099 ~ 3481542 (-) True G406993
TU467679 lncRNA upstream 29110 3504906 ~ 3560018 (-) True G407030
TU467763 lncRNA upstream 156625 3632421 ~ 3634581 (-) True G407112
TU467769 lncRNA upstream 161994 3637790 ~ 3643952 (-) True G407117
CI01000299_03341031_03366645.mRNA mRNA downstream 108802 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03206204_03214303.mRNA mRNA downstream 261227 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03104921_03106385.mRNA mRNA downstream 369145 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_02951402_03057288.mRNA mRNA downstream 418242 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_02891830_02905146.mRNA mRNA downstream 570384 2891574 ~ 2905146 (-) True CI01000299_02891830_02905146
CI01000299_03492360_03492614.mRNA mRNA upstream 16418 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_04136702_04142005.mRNA mRNA upstream 659024 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
CI01000299_04158468_04164223.mRNA mRNA upstream 682205 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
CI01000299_04171373_04175441.mRNA mRNA upstream 695353 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
CI01000299_04186183_04196219.mRNA mRNA upstream 709171 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
TU465509 other downstream 1457480 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 1594542 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1815530 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 2399639 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2802674 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 665322 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 1000198 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 1450172 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 1965541 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 2342773 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile