RNA id: TU467640


Basic Information

Item Value
RNA id TU467640
length 243
lncRNA type antisense_over
GC content 0.52
exon number 2
gene id G406993
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3481099 ~ 3481542 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGATCTTCTTGTACAGTTGGAGGGAACTGGATCCTATATAAGCTTTCCGAAAAGGGAGCAGGGCTGCATAGAATCCATATTCCAGCTCAAAATCCAAGGTGTAGCTGAGCAGAGCGAGGCAGCCTCCTGGCCTCAGAATCCTGTCTGCCTCCCGCAGGAAGCGCGGATGGTCAAACCAGTGAGCAGCTGACATGGATGTAACCAAGTCGGCCACATCATCCTCAAAGGGCAACTCCTCTGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467671 lncRNA downstream 3115 3477600 ~ 3477984 (-) True G407023
TU467668 lncRNA downstream 5303 3475530 ~ 3475796 (-) True G407020
TU467663 lncRNA downstream 8476 3472121 ~ 3472623 (-) True G407015
TU467660 lncRNA downstream 11721 3469091 ~ 3469378 (-) True G407012
TU467659 lncRNA downstream 13347 3467259 ~ 3467752 (-) True G407011
TU467679 lncRNA upstream 23364 3504906 ~ 3560018 (-) True G407030
TU467763 lncRNA upstream 150879 3632421 ~ 3634581 (-) True G407112
TU467769 lncRNA upstream 156248 3637790 ~ 3643952 (-) True G407117
TU467773 lncRNA upstream 163052 3644594 ~ 3655355 (-) True G407119
TU467888 lncRNA upstream 432479 3914021 ~ 3920821 (-) True G407232
CI01000299_03341031_03366645.mRNA mRNA downstream 114371 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03206204_03214303.mRNA mRNA downstream 266796 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03104921_03106385.mRNA mRNA downstream 374714 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_02951402_03057288.mRNA mRNA downstream 423811 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_02891830_02905146.mRNA mRNA downstream 575953 2891574 ~ 2905146 (-) True CI01000299_02891830_02905146
CI01000299_03492360_03492614.mRNA mRNA upstream 10672 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_04136702_04142005.mRNA mRNA upstream 653278 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
CI01000299_04158468_04164223.mRNA mRNA upstream 676459 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
CI01000299_04171373_04175441.mRNA mRNA upstream 689607 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
CI01000299_04186183_04196219.mRNA mRNA upstream 703425 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
TU465509 other downstream 1463049 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 1600111 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1821099 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 2405208 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2808243 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 659576 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 994452 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 1444426 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 1959795 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 2337027 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile