RNA id: TU467769


Basic Information

Item Value
RNA id TU467769
length 526
lncRNA type antisense_over
GC content 0.48
exon number 5
gene id G407117
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 3637790 ~ 3643952 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGAACACAACGGATCACAAACCATCCGCTCTTTAGTACACTCTCTGGGGTCCCTGTTGTTCCTGATCATAGCTCTCTGGGTGCTGGTGCGGAACAGACCGGTCCAGTTCACTGTATTGTAGAAGCAGAGCTGGCTGTTGTTGGTCATGTAGACGTTACCGGCGCTGATCTCTCTCAAAGACTGGAACTGCAGTGAAGAGATCCAGCTCTGCTTCAGGATCAGCAGAGAAATACCACTATAAAGAGACCGCCCTCCGATGGTGGCAAGGTTAGAGAAAACACCAAGATCTGTCATGTTTTCTGGCCAAGACTGGATGTTTAAGAAACCTGTGATCTCTCTGACGGTGCGGAATACATTTAGCCGATCAGGATCCAGAGCTCTGATACCATGAAACATGTCCCCTTTGATGCCCGTGATGAGGAAAATTAGGTTTCCGTTGATTTTGGTGCAATTGACAAACTTCTCGATGTTCCTGGAATCTACAGTTTGAGCCGTTTGAAGACTGCCGGTACCTATACCATCACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467763 lncRNA downstream 3209 3632421 ~ 3634581 (-) True G407112
TU467679 lncRNA downstream 77772 3504906 ~ 3560018 (-) True G407030
TU467640 lncRNA downstream 156248 3481099 ~ 3481542 (-) True G406993
TU467671 lncRNA downstream 159806 3477600 ~ 3477984 (-) True G407023
TU467668 lncRNA downstream 161994 3475530 ~ 3475796 (-) True G407020
TU467773 lncRNA upstream 642 3644594 ~ 3655355 (-) True G407119
TU467888 lncRNA upstream 270069 3914021 ~ 3920821 (-) True G407232
TU467939 lncRNA upstream 390780 4034732 ~ 4037784 (-) True G407280
TU467976 lncRNA upstream 405590 4049542 ~ 4049827 (-) True G407303
TU467979 lncRNA upstream 422253 4066205 ~ 4066648 (-) True G407306
CI01000299_03492360_03492614.mRNA mRNA downstream 144646 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_03341031_03366645.mRNA mRNA downstream 271062 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03206204_03214303.mRNA mRNA downstream 423487 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03104921_03106385.mRNA mRNA downstream 531405 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_02951402_03057288.mRNA mRNA downstream 580502 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_04136702_04142005.mRNA mRNA upstream 490868 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
CI01000299_04158468_04164223.mRNA mRNA upstream 514049 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
CI01000299_04171373_04175441.mRNA mRNA upstream 527197 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
CI01000299_04186183_04196219.mRNA mRNA upstream 541015 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
CI01000299_04227918_04239792.mRNA mRNA upstream 583568 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
TU465509 other downstream 1619740 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 1756802 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 1977790 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 2561899 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 2964934 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 497166 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 832042 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 1282016 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 1797385 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 2174617 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile