RNA id: TU467939


Basic Information

Item Value
RNA id TU467939
length 470
lncRNA type antisense_over
GC content 0.51
exon number 4
gene id G407280
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4034732 ~ 4037784 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGATGTTCTCCTGGTGCTCATGAACATAGTCCAGCAGACAGCCGTGGGGCATGAGCTGAGTTACCAGCTGAAGAGTGGGACTCAAGCAGACCCCCAACAGACGCACTAGATGAGGATGCTCCATGCTGGCCATGATCAGCGCCTCATCCATAAACTCCACATTGGCTTTAGGTCCTGTACTTTCATTGAGGATCTTTATGGCCACAGGAATCTTCACTGTTTCTCCTTCTGGAATCCAGATTCCCTTGTAAACAGTGCCAAAGGCTCCTGTTCCCAAGATCTTGACCCTCTTGAGCTCCGTCTCCTTCAGTATACGTAACTGTGCCTGGTTGGGTGCCGTGCCGCTCGGCGTTAAAGGCTCTACCAGCTCTGTTTCTAAGAAACGGCGTAAAGCTCTTTTCTTCTTGATGCTCTTCCGACGGAAAAAGATAGCAAATCCGAGCGCCACGATCACAACCACAAACATCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467888 lncRNA downstream 113911 3914021 ~ 3920821 (-) True G407232
TU467773 lncRNA downstream 379377 3644594 ~ 3655355 (-) True G407119
TU467769 lncRNA downstream 390780 3637790 ~ 3643952 (-) True G407117
TU467763 lncRNA downstream 400151 3632421 ~ 3634581 (-) True G407112
TU467679 lncRNA downstream 474714 3504906 ~ 3560018 (-) True G407030
TU467976 lncRNA upstream 11758 4049542 ~ 4049827 (-) True G407303
TU467979 lncRNA upstream 28421 4066205 ~ 4066648 (-) True G407306
TU467957 lncRNA upstream 83895 4121679 ~ 4126723 (-) False G407288
TU467958 lncRNA upstream 85533 4123317 ~ 4127640 (-) False G407288
TU467959 lncRNA upstream 85533 4123317 ~ 4127640 (-) False G407288
CI01000299_03492360_03492614.mRNA mRNA downstream 541588 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_03341031_03366645.mRNA mRNA downstream 668004 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03206204_03214303.mRNA mRNA downstream 820429 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03104921_03106385.mRNA mRNA downstream 928347 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_02951402_03057288.mRNA mRNA downstream 977444 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_04136702_04142005.mRNA mRNA upstream 97036 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
CI01000299_04158468_04164223.mRNA mRNA upstream 120217 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
CI01000299_04171373_04175441.mRNA mRNA upstream 133365 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
CI01000299_04186183_04196219.mRNA mRNA upstream 147183 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
CI01000299_04227918_04239792.mRNA mRNA upstream 189736 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
TU465509 other downstream 2016682 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2153744 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2374732 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 2958841 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 3361876 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 103334 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 438210 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 888184 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 1403553 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1780785 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile