RNA id: TU466061


Basic Information

Item Value
RNA id TU466061
length 435
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G405569
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4065131 ~ 4065565 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGATGACCGAATTTTCATTTTTGGGTGAACTATCCCTTTAATTTCTCTGAGCCATTTTTGCATTAGTAAGGTAATTTTAGTGGACATATGAAGTCAGTTCCTGTCAGTTTCCAACAAGAAAGTGTCAAAATGCTATTTAATTTGAGCAGCATACTGCTTCAGTTTAAAAACTAACAAAATTAGTTTTTAAAAAAATGGTTTAAAGTTCGTGCTTCTGCTATTTGTTTTTAAATTAATAAATGCCACTTTGTTCAATACTTTGTTATTTAATGCAGTAATATTCAAACATTTATAAGTGTGGCCAAAAAGAGCTTTGTCAGTTTTGTAGATTGTTTTAGTTCCAGTTTTATTATAACATGAAAGCCCCAAATCATTCCCCTTTCTGTTTCCATTTTAATTAGTAGTGACCGCCCTCCACCAAACTGAATGCCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466070 lncRNA upstream 152173 3893020 ~ 3912958 (+) True G405578
TU466246 lncRNA upstream 281205 3778033 ~ 3783926 (+) True G405742
TU466205 lncRNA upstream 339951 3698428 ~ 3725180 (+) True G405710
TU466071 lncRNA upstream 508028 3552314 ~ 3557103 (+) True G405579
TU466067 lncRNA upstream 529433 3505295 ~ 3535698 (+) True G405575
TU466301 lncRNA downstream 11240 4076805 ~ 4077037 (+) True G405797
TU466060 lncRNA downstream 13410 4078975 ~ 4116184 (+) True G405568
TU466065 lncRNA downstream 63429 4128994 ~ 4129600 (+) True G405573
TU466069 lncRNA downstream 114285 4179850 ~ 4196335 (+) True G405577
TU466319 lncRNA downstream 153876 4219441 ~ 4219649 (+) True G405815
CI01000299_03981006_04059237.mRNA mRNA upstream 5894 3981006 ~ 4059237 (+) True CI01000299_03981006_04059237
CI01000299_03594891_03678552.mRNA mRNA upstream 385519 3594891 ~ 3679612 (+) True CI01000299_03594891_03678552
CI01000299_03495286_03498691.mRNA mRNA upstream 566402 3494539 ~ 3498729 (+) True CI01000299_03495286_03498691
CI01000299_03478949_03486009.mRNA mRNA upstream 579122 3476088 ~ 3486009 (+) False CI01000299_03478949_03486009
CI01000299_03453437_03453736.mRNA mRNA upstream 610922 3452300 ~ 3454209 (+) True CI01000299_03453437_03453736
CI01000299_04105476_04115171.mRNA mRNA downstream 39911 4105476 ~ 4115227 (+) True CI01000299_04105476_04115171
CI01000299_04122601_04126314.mRNA mRNA downstream 57036 4122601 ~ 4126381 (+) True CI01000299_04122601_04126314
CI01000299_04131136_04133439.mRNA mRNA downstream 65495 4131060 ~ 4133802 (+) False CI01000299_04131136_04133439
CI01000299_04259743_04263032.mRNA mRNA downstream 193356 4258921 ~ 4263493 (+) True CI01000299_04259743_04263032
CI01000299_04269257_04269673.mRNA mRNA downstream 202902 4268467 ~ 4269765 (+) True CI01000299_04269257_04269673
TU466101 other upstream 909957 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 3458781 604870 ~ 606350 (+) True G403972
TU463930 other upstream 3654343 364139 ~ 410788 (+) True G403609
TU463894 other upstream 3992860 35462 ~ 72271 (+) True G403578
TU466041 other downstream 65693 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 229968 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 424253 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 636817 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 858897 4924462 ~ 4927844 (+) True G406096

Expression Profile