RNA id: TU466301


Basic Information

Item Value
RNA id TU466301
length 233
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G405797
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4076805 ~ 4077037 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGAACACGCATTTTGATTGGTAACGATAGTCATAAGTCATTTCATGACGACAGACGTAACACGACACTGTCATTATTTTTACGCCAGCTAGAGGGTGCATGACTTTAAAACATAAATATAGGTCATAATAGGGTGGTTGAAAAATGGCCTATAGGGTCATTTTGTTTTGGAGGAGGACAGTCTCATAATTTGGCAGCAGGTTTATTAGGCTGCTGTCACTTTAAGACCTGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466061 lncRNA upstream 11240 4065131 ~ 4065565 (+) True G405569
TU466070 lncRNA upstream 163847 3893020 ~ 3912958 (+) True G405578
TU466246 lncRNA upstream 292879 3778033 ~ 3783926 (+) True G405742
TU466205 lncRNA upstream 351625 3698428 ~ 3725180 (+) True G405710
TU466071 lncRNA upstream 519702 3552314 ~ 3557103 (+) True G405579
TU466060 lncRNA downstream 1938 4078975 ~ 4116184 (+) True G405568
TU466065 lncRNA downstream 51957 4128994 ~ 4129600 (+) True G405573
TU466069 lncRNA downstream 102813 4179850 ~ 4196335 (+) True G405577
TU466319 lncRNA downstream 142404 4219441 ~ 4219649 (+) True G405815
TU466321 lncRNA downstream 146124 4223161 ~ 4223448 (+) True G405817
CI01000299_03981006_04059237.mRNA mRNA upstream 17568 3981006 ~ 4059237 (+) True CI01000299_03981006_04059237
CI01000299_03594891_03678552.mRNA mRNA upstream 397193 3594891 ~ 3679612 (+) True CI01000299_03594891_03678552
CI01000299_03495286_03498691.mRNA mRNA upstream 578076 3494539 ~ 3498729 (+) True CI01000299_03495286_03498691
CI01000299_03478949_03486009.mRNA mRNA upstream 590796 3476088 ~ 3486009 (+) False CI01000299_03478949_03486009
CI01000299_03453437_03453736.mRNA mRNA upstream 622596 3452300 ~ 3454209 (+) True CI01000299_03453437_03453736
CI01000299_04105476_04115171.mRNA mRNA downstream 28439 4105476 ~ 4115227 (+) True CI01000299_04105476_04115171
CI01000299_04122601_04126314.mRNA mRNA downstream 45564 4122601 ~ 4126381 (+) True CI01000299_04122601_04126314
CI01000299_04131136_04133439.mRNA mRNA downstream 54023 4131060 ~ 4133802 (+) False CI01000299_04131136_04133439
CI01000299_04259743_04263032.mRNA mRNA downstream 181884 4258921 ~ 4263493 (+) True CI01000299_04259743_04263032
CI01000299_04269257_04269673.mRNA mRNA downstream 191430 4268467 ~ 4269765 (+) True CI01000299_04269257_04269673
TU466101 other upstream 921631 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 3470455 604870 ~ 606350 (+) True G403972
TU463930 other upstream 3666017 364139 ~ 410788 (+) True G403609
TU463894 other upstream 4004534 35462 ~ 72271 (+) True G403578
TU466041 other downstream 54221 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 218496 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 412781 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 625345 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 847425 4924462 ~ 4927844 (+) True G406096

Expression Profile