RNA id: TU466060


Basic Information

Item Value
RNA id TU466060
length 218
lncRNA type sense_over
GC content 0.39
exon number 2
gene id G405568
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4078975 ~ 4116184 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTTTGTGTGGGAAAAATATCCATATTTGAAACTTTATAAACGTAAATGCGTTGGGTCAGAGGTCACCTTTTCCACTGGAACTCAACACTCGTGAACATGTGTACAGCTGTTGCTGGAAGCCAGTGATTATAGTTAATAAAGTTTTAAATATGGATATTTTTCTTACAAAAACCCATCGCTTGGCTTCAGAAGGCCTTTATAAACCCCCTGGAGTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466301 lncRNA upstream 1938 4076805 ~ 4077037 (+) True G405797
TU466061 lncRNA upstream 13410 4065131 ~ 4065565 (+) True G405569
TU466070 lncRNA upstream 166017 3893020 ~ 3912958 (+) True G405578
TU466246 lncRNA upstream 295049 3778033 ~ 3783926 (+) True G405742
TU466205 lncRNA upstream 353795 3698428 ~ 3725180 (+) True G405710
TU466065 lncRNA downstream 12810 4128994 ~ 4129600 (+) True G405573
TU466069 lncRNA downstream 63666 4179850 ~ 4196335 (+) True G405577
TU466319 lncRNA downstream 103257 4219441 ~ 4219649 (+) True G405815
TU466321 lncRNA downstream 106977 4223161 ~ 4223448 (+) True G405817
TU466322 lncRNA downstream 108631 4224815 ~ 4225273 (+) True G405818
CI01000299_03981006_04059237.mRNA mRNA upstream 19738 3981006 ~ 4059237 (+) True CI01000299_03981006_04059237
CI01000299_03594891_03678552.mRNA mRNA upstream 399363 3594891 ~ 3679612 (+) True CI01000299_03594891_03678552
CI01000299_03495286_03498691.mRNA mRNA upstream 580246 3494539 ~ 3498729 (+) True CI01000299_03495286_03498691
CI01000299_03478949_03486009.mRNA mRNA upstream 592966 3476088 ~ 3486009 (+) False CI01000299_03478949_03486009
CI01000299_03453437_03453736.mRNA mRNA upstream 624766 3452300 ~ 3454209 (+) True CI01000299_03453437_03453736
CI01000299_04122601_04126314.mRNA mRNA downstream 6417 4122601 ~ 4126381 (+) True CI01000299_04122601_04126314
CI01000299_04131136_04133439.mRNA mRNA downstream 14876 4131060 ~ 4133802 (+) False CI01000299_04131136_04133439
CI01000299_04259743_04263032.mRNA mRNA downstream 142737 4258921 ~ 4263493 (+) True CI01000299_04259743_04263032
CI01000299_04269257_04269673.mRNA mRNA downstream 152283 4268467 ~ 4269765 (+) True CI01000299_04269257_04269673
CI01000299_04472181_04474247.mRNA mRNA downstream 354772 4470956 ~ 4474271 (+) True CI01000299_04472181_04474247
TU466101 other upstream 923801 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 3472625 604870 ~ 606350 (+) True G403972
TU463930 other upstream 3668187 364139 ~ 410788 (+) True G403609
TU463894 other upstream 4006704 35462 ~ 72271 (+) True G403578
TU466041 other downstream 15074 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466350 other downstream 179349 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 373634 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 586198 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 808278 4924462 ~ 4927844 (+) True G406096

Expression Profile