RNA id: TU467956


Basic Information

Item Value
RNA id TU467956
length 1614
lncRNA type antisense_over
GC content 0.47
exon number 4
gene id G407288
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4121679 ~ 4127640 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATTGTGAAATGACTGTGTGAAAATTGGGATGGGGGAATATTGGCAGCCTGACCACAGCAGTGTCATGTGCCTTTAACACACAGCTGGCGGTGCTGTTGTAACCCTGGATGGGTGGAGAAAGAGGAAACCAACCCTCACTTCATGAGTGGCCTTTTCCTTCTTCCCCGGTCTCCATCCCACTGTGGACGGCCGCCCCGGGCGGAACAAGAAGGCAAGGAGGGTCAACTGCATGACGATGTAACTTCCAAAAAGGTGGGCGAGAGGGGAGAAAACAAATAAAGGAAAAAAAAAAAAAAAATAACAGAATGGTTTAGAAGTGACATCCCATAGTCCTTTTTATTGATTGGTCTTCGAAACAGAGTGGATGTCCTGACACCATGGGGTCTGCAGATATAGTTCAGCCTTCTTCACCACTCCCTCAACGGACGGCCTCTTACACGGACATGATGTGCTTGACGAAAGCCATAGTGGACACTGCCGTTCTCGTCCTCCTGTCCCTGCATGAGAGAGTCAATCTCGGGCTCGGTCATCTTCTCACCTGTCGGTGCCAGTGTTGACAGCACAATACGCAGCTCAGCGCCCATCACTGTGCCGTTGCCCTCTTTGTCGAAGACGCGCAGACCCTCAACGTAGTCATCATAGGTACCCTTCTGGACGGCGTCAACAGTCTTCAACATTGGCAGGAAAGCCTCAAAGTCAATTCTTTTGTTGGCCATCGTCAGCAGATGGGTCACCCAGGATTTTCTTCACATCCTTGTTGGTGGGGTTCTGACCCAGGGCGCGCATGATGTCGGCAATCTGGTTGTAGGCAACCTTGTTGTCACCAACTCTGTCGAAGAGACCGAAAGCCTCTTTGAAGTCTGTAACAGAAGCACACAAGGGACTTTTAAAGTTATCTGGAAGTACAGACATTTTTAAGTCATCTATCTATCATTTTAGGGACAATATTGCTTTAAAAGCAGGCAAGGTCAAGGAAACTTCACGTCCTGACATTGCCTCCTTTCCCACAACCCTCCTTTGCCAACTGTACATGCAGCAGAGGAGGAAGGAAGCAAAATTAAAAAGAGCTTAGCAACTGCATTTCCATGGGCCGTGAGGGAGACTAAGTTGAAAGTGATCTGCTGACAGAAAAATAGCATCCTACGACTTCTGTTGCTCTAGCAGCTGTGCCTCGCCGTTGGATGGAGGTGGCACTTAATGCGTGACGTGACAGGCGATACCCTCGGAGAAAGTAGCCCTTGCCATAAATGGATATGGCTCTTCGACCGTCCCGAGTCTAATGCAAGAATGCTGACAGCAACGTAACCTACACCCACAACCAACCGCATACTTTCTGCACCTAAATGAGTAACACCAGGCTGTGAACTGCTTGAGATGGTTTGGTACCTATGAATTCTTTCTGTAGGGAATTGAATGTATGCTTTTGATCAGACTACTTTGCAACAGGGTATGGCAAATAATTCCCACTCAACACACTGATTACTCAATTTATCAGTCAACCTGCTTTTTGCTTAAATTAAGCAGGTTTTGATGCCATAGGTTCGCTGAGGGCCAAACAACATATTTAGCATCACTGAATCAACCTAAATAAATTCATTTATACCAGCAAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467979 lncRNA downstream 56842 4066205 ~ 4066648 (-) True G407306
TU467976 lncRNA downstream 73663 4049542 ~ 4049827 (-) True G407303
TU467939 lncRNA downstream 85706 4034732 ~ 4037784 (-) True G407280
TU467888 lncRNA downstream 202669 3914021 ~ 3920821 (-) True G407232
TU467773 lncRNA downstream 468135 3644594 ~ 3655355 (-) True G407119
TU467991 lncRNA upstream 2280 4129003 ~ 4129220 (-) True G407318
TU467968 lncRNA upstream 30102 4156825 ~ 4179627 (-) True G407296
TU468003 lncRNA upstream 81074 4207797 ~ 4208154 (-) True G407330
TU468013 lncRNA upstream 132759 4259482 ~ 4263461 (-) True G407340
TU468016 lncRNA upstream 139631 4266354 ~ 4266553 (-) True G407343
CI01000299_03492360_03492614.mRNA mRNA downstream 630346 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_03341031_03366645.mRNA mRNA downstream 756762 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03206204_03214303.mRNA mRNA downstream 909187 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03104921_03106385.mRNA mRNA downstream 1017105 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_02951402_03057288.mRNA mRNA downstream 1066202 2951402 ~ 3057288 (-) True CI01000299_02951402_03057288
CI01000299_04136702_04142005.mRNA mRNA upstream 8097 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
CI01000299_04158468_04164223.mRNA mRNA upstream 31278 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
CI01000299_04171373_04175441.mRNA mRNA upstream 44426 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
CI01000299_04186183_04196219.mRNA mRNA upstream 58244 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
CI01000299_04227918_04239792.mRNA mRNA upstream 100797 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
TU465509 other downstream 2105440 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2242502 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2463490 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 3047599 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 3450634 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU467961 other upstream 14395 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU468104 other upstream 349271 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 799245 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 1314614 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1691846 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061

Expression Profile