RNA id: TU467968


Basic Information

Item Value
RNA id TU467968
length 504
lncRNA type read_through
GC content 0.36
exon number 2
gene id G407296
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4156825 ~ 4179627 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTTTTAAAATGACACCATATTTCTCATTTATTAGTGAATCATAAACTACAGAGTCTTCTTTCATTGCTAAGAATGAAACTTAAACAATCCTAAATGACTGGACCACTACATTCCTTCTCTGGAGAACAACTAAACTAAAAGCAAATGATAACGGGTCGGTGCAGCACATATTGTACAGCAATAAAGATTATGCTCATTTTCTCTGTTTGCACCTTACACAGGAAGGCATTTTTAACCACAGCGTGGCTAAAAAACAAAATAGCTACAATAAAAAGATGCTTGATAGCATAAACATTCATTACATATATACATTTGTACAATGTTTATCAAACAAAGAGACAATAAGACAAATATTTCAGTGCCCAAAAGCAAGCTATTGAAAGAAGCCAGATGCTACTGATCTGTCTGGGATTTGAGCTTCCTCTCCCAAAGTTTCTGATGGTCTGAGAATCCCTGCTTTCCTTTGTTGAAGGAATTGGGTCCAGCTGATGTGGGCGTTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU467991 lncRNA downstream 27605 4129003 ~ 4129220 (-) True G407318
TU467958 lncRNA downstream 29185 4123317 ~ 4127640 (-) False G407288
TU467959 lncRNA downstream 29185 4123317 ~ 4127640 (-) False G407288
TU467957 lncRNA downstream 30102 4121679 ~ 4126723 (-) False G407288
TU467956 lncRNA downstream 30102 4123490 ~ 4126723 (-) True G407288
TU468003 lncRNA upstream 28170 4207797 ~ 4208154 (-) True G407330
TU468013 lncRNA upstream 79855 4259482 ~ 4263461 (-) True G407340
TU468016 lncRNA upstream 86727 4266354 ~ 4266553 (-) True G407343
TU468017 lncRNA upstream 87592 4267219 ~ 4267442 (-) True G407344
TU468021 lncRNA upstream 92285 4271912 ~ 4272172 (-) True G407348
CI01000299_04136702_04142005.mRNA mRNA downstream 14700 4134820 ~ 4142125 (-) False CI01000299_04136702_04142005
CI01000299_03492360_03492614.mRNA mRNA downstream 663681 3492214 ~ 3493144 (-) True CI01000299_03492360_03492614
CI01000299_03341031_03366645.mRNA mRNA downstream 790097 3340766 ~ 3366728 (-) True CI01000299_03341031_03366645
CI01000299_03206204_03214303.mRNA mRNA downstream 942522 3206185 ~ 3214303 (-) True CI01000299_03206204_03214303
CI01000299_03104921_03106385.mRNA mRNA downstream 1050440 3104605 ~ 3106385 (-) True CI01000299_03104921_03106385
CI01000299_04186183_04196219.mRNA mRNA upstream 5340 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
CI01000299_04227918_04239792.mRNA mRNA upstream 47893 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
CI01000299_04242809_04251680.mRNA mRNA upstream 62570 4242197 ~ 4251865 (-) True CI01000299_04242809_04251680
CI01000299_04370401_04385955.mRNA mRNA upstream 190774 4370401 ~ 4388020 (-) True CI01000299_04370401_04385955
CI01000299_04398464_04403711.mRNA mRNA upstream 216847 4396474 ~ 4403711 (-) False CI01000299_04398464_04403711
TU465509 other downstream 2138775 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2275837 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2496825 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 3080934 1070607 ~ 1075891 (-) True G404372
TU464604 other downstream 3483969 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU468104 other upstream 296367 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 746341 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 1261710 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1638942 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1648209 5835889 ~ 5835989 (-) True G407805

Expression Profile