RNA id: TU466321


Basic Information

Item Value
RNA id TU466321
length 288
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G405817
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4223161 ~ 4223448 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGTCTCCAAAAGTTATTCAATATGGCATAAGGCATTGTGGTCTTTGAGTAATTGTTCCTGATTTTTAACCAGCTGTAAATGTTTGGGGCAACCAGAAAAGGTCTTTTGTCATTTCTAGTCCAGATGTGTGCTTTCTTCCGGATATACAACTTCAGCTGTTCTCTCTGATTTAGTGAAGCATTGTGTGTTGCGGATGATGTATTTCAGTCATTGTAAGTAGTTTTTAGGTAAAGAGAGTGGAATTAAAACTCTCAAGTCATCCATACTTGGCAGAATATTGGATCTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466319 lncRNA upstream 3512 4219441 ~ 4219649 (+) True G405815
TU466069 lncRNA upstream 26826 4179850 ~ 4196335 (+) True G405577
TU466065 lncRNA upstream 93561 4128994 ~ 4129600 (+) True G405573
TU466060 lncRNA upstream 106977 4078975 ~ 4116184 (+) True G405568
TU466301 lncRNA upstream 146124 4076805 ~ 4077037 (+) True G405797
TU466322 lncRNA downstream 1367 4224815 ~ 4225273 (+) True G405818
TU466332 lncRNA downstream 17412 4240860 ~ 4241092 (+) True G405825
TU466046 lncRNA downstream 17753 4241201 ~ 4242968 (+) True G405554
TU466335 lncRNA downstream 30314 4253762 ~ 4254064 (+) True G405828
TU466336 lncRNA downstream 31266 4254714 ~ 4255014 (+) True G405829
CI01000299_04131136_04133439.mRNA mRNA upstream 89359 4131060 ~ 4133802 (+) False CI01000299_04131136_04133439
CI01000299_04122601_04126314.mRNA mRNA upstream 96780 4122601 ~ 4126381 (+) True CI01000299_04122601_04126314
CI01000299_04105476_04115171.mRNA mRNA upstream 107934 4105476 ~ 4115227 (+) True CI01000299_04105476_04115171
CI01000299_03981006_04059237.mRNA mRNA upstream 163924 3981006 ~ 4059237 (+) True CI01000299_03981006_04059237
CI01000299_03594891_03678552.mRNA mRNA upstream 543549 3594891 ~ 3679612 (+) True CI01000299_03594891_03678552
CI01000299_04259743_04263032.mRNA mRNA downstream 35473 4258921 ~ 4263493 (+) True CI01000299_04259743_04263032
CI01000299_04269257_04269673.mRNA mRNA downstream 45019 4268467 ~ 4269765 (+) True CI01000299_04269257_04269673
CI01000299_04472181_04474247.mRNA mRNA downstream 247508 4470956 ~ 4474271 (+) True CI01000299_04472181_04474247
CI01000299_04480751_04492829.mRNA mRNA downstream 257105 4480553 ~ 4493116 (+) False CI01000299_04480751_04492829
CI01000299_04496757_04504238.mRNA mRNA downstream 272938 4496386 ~ 4504483 (+) False CI01000299_04496757_04504238
TU466041 other upstream 89220 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466101 other upstream 1067987 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 3616811 604870 ~ 606350 (+) True G403972
TU463930 other upstream 3812373 364139 ~ 410788 (+) True G403609
TU463889 other upstream 4150890 72177 ~ 72271 (+) True G403578
TU466350 other downstream 72085 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 266370 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 478934 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 701014 4924462 ~ 4927844 (+) True G406096
TU466818 other downstream 1147733 5371181 ~ 5373579 (+) True G406244

Expression Profile