RNA id: TU466335


Basic Information

Item Value
RNA id TU466335
length 303
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G405828
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4253762 ~ 4254064 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTGGGGACTGAGGAGACAAGTTGCTCAAGTTTAGGAATAGGAATGTTGTCCCATTCTTGTCTAATACAGGCTTCTAGTTGCTCAACTGTCTTAGGTCTTCTTTGTCGCATCTTCCTCTTTATGATGCGCCAAATGTTTTCTATGGGTGAAAGATCTGGACTGCAGGCTGGCCATTTCAGTACCCGGATCCTTCTTCTACGCAGCCATGATGTTGTAATTGATGCAGTATGTGGTCTGGCATTGTCATGTTGGAAAATGCAAGGTCTCCCCTGAAAGAGACGACGTCTGGATGGAAGCATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466046 lncRNA upstream 10794 4241201 ~ 4242968 (+) True G405554
TU466332 lncRNA upstream 12670 4240860 ~ 4241092 (+) True G405825
TU466322 lncRNA upstream 28489 4224815 ~ 4225273 (+) True G405818
TU466321 lncRNA upstream 30314 4223161 ~ 4223448 (+) True G405817
TU466319 lncRNA upstream 34113 4219441 ~ 4219649 (+) True G405815
TU466336 lncRNA downstream 650 4254714 ~ 4255014 (+) True G405829
TU466338 lncRNA downstream 23314 4277378 ~ 4277736 (+) True G405831
TU466340 lncRNA downstream 27360 4281424 ~ 4281630 (+) True G405833
TU466344 lncRNA downstream 31160 4285224 ~ 4285560 (+) True G405837
TU466422 lncRNA downstream 134387 4388451 ~ 4388657 (+) True G405905
CI01000299_04131136_04133439.mRNA mRNA upstream 119960 4131060 ~ 4133802 (+) False CI01000299_04131136_04133439
CI01000299_04122601_04126314.mRNA mRNA upstream 127381 4122601 ~ 4126381 (+) True CI01000299_04122601_04126314
CI01000299_04105476_04115171.mRNA mRNA upstream 138535 4105476 ~ 4115227 (+) True CI01000299_04105476_04115171
CI01000299_03981006_04059237.mRNA mRNA upstream 194525 3981006 ~ 4059237 (+) True CI01000299_03981006_04059237
CI01000299_03594891_03678552.mRNA mRNA upstream 574150 3594891 ~ 3679612 (+) True CI01000299_03594891_03678552
CI01000299_04259743_04263032.mRNA mRNA downstream 4857 4258921 ~ 4263493 (+) True CI01000299_04259743_04263032
CI01000299_04269257_04269673.mRNA mRNA downstream 14403 4268467 ~ 4269765 (+) True CI01000299_04269257_04269673
CI01000299_04472181_04474247.mRNA mRNA downstream 216892 4470956 ~ 4474271 (+) True CI01000299_04472181_04474247
CI01000299_04480751_04492829.mRNA mRNA downstream 226489 4480553 ~ 4493116 (+) False CI01000299_04480751_04492829
CI01000299_04496757_04504238.mRNA mRNA downstream 242322 4496386 ~ 4504483 (+) False CI01000299_04496757_04504238
TU466041 other upstream 119821 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466101 other upstream 1098588 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 3647412 604870 ~ 606350 (+) True G403972
TU463930 other upstream 3842974 364139 ~ 410788 (+) True G403609
TU463889 other upstream 4181491 72177 ~ 72271 (+) True G403578
TU466350 other downstream 41469 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 235754 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 448318 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 670398 4924462 ~ 4927844 (+) True G406096
TU466818 other downstream 1117117 5371181 ~ 5373579 (+) True G406244

Expression Profile