RNA id: TU466336


Basic Information

Item Value
RNA id TU466336
length 301
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G405829
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4254714 ~ 4255014 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGAGAAACTCCTTTCTGATATTGCTCCACTATTTTTCGCCGCAGCATTGGGGGAATTGGTGATCCTCTGCCCATCTTGACTTCTGAGAGACACTGCCACTCTGAGAGGCTCTTTTTATAACCAATCATGTTGCCAATTGACCTAATAAGTTGCAAATTGGTCCTCCAGCTGTTCCTTATATGTACATTTAACTTTTCCGGCCTCTTATTGCTACCTGTCCCAACTTTTTTGGAATGTGTAGCTCTCATGAAATCCAAAATGAGCCAATATTTAGCATGACATTTCAAAATGTCTCACTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466335 lncRNA upstream 650 4253762 ~ 4254064 (+) True G405828
TU466046 lncRNA upstream 11746 4241201 ~ 4242968 (+) True G405554
TU466332 lncRNA upstream 13622 4240860 ~ 4241092 (+) True G405825
TU466322 lncRNA upstream 29441 4224815 ~ 4225273 (+) True G405818
TU466321 lncRNA upstream 31266 4223161 ~ 4223448 (+) True G405817
TU466338 lncRNA downstream 22364 4277378 ~ 4277736 (+) True G405831
TU466340 lncRNA downstream 26410 4281424 ~ 4281630 (+) True G405833
TU466344 lncRNA downstream 30210 4285224 ~ 4285560 (+) True G405837
TU466422 lncRNA downstream 133437 4388451 ~ 4388657 (+) True G405905
TU466423 lncRNA downstream 134700 4389714 ~ 4390144 (+) True G405906
CI01000299_04131136_04133439.mRNA mRNA upstream 120912 4131060 ~ 4133802 (+) False CI01000299_04131136_04133439
CI01000299_04122601_04126314.mRNA mRNA upstream 128333 4122601 ~ 4126381 (+) True CI01000299_04122601_04126314
CI01000299_04105476_04115171.mRNA mRNA upstream 139487 4105476 ~ 4115227 (+) True CI01000299_04105476_04115171
CI01000299_03981006_04059237.mRNA mRNA upstream 195477 3981006 ~ 4059237 (+) True CI01000299_03981006_04059237
CI01000299_03594891_03678552.mRNA mRNA upstream 575102 3594891 ~ 3679612 (+) True CI01000299_03594891_03678552
CI01000299_04259743_04263032.mRNA mRNA downstream 3907 4258921 ~ 4263493 (+) True CI01000299_04259743_04263032
CI01000299_04269257_04269673.mRNA mRNA downstream 13453 4268467 ~ 4269765 (+) True CI01000299_04269257_04269673
CI01000299_04472181_04474247.mRNA mRNA downstream 215942 4470956 ~ 4474271 (+) True CI01000299_04472181_04474247
CI01000299_04480751_04492829.mRNA mRNA downstream 225539 4480553 ~ 4493116 (+) False CI01000299_04480751_04492829
CI01000299_04496757_04504238.mRNA mRNA downstream 241372 4496386 ~ 4504483 (+) False CI01000299_04496757_04504238
TU466041 other upstream 120773 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466101 other upstream 1099540 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 3648364 604870 ~ 606350 (+) True G403972
TU463930 other upstream 3843926 364139 ~ 410788 (+) True G403609
TU463889 other upstream 4182443 72177 ~ 72271 (+) True G403578
TU466350 other downstream 40519 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 234804 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 447368 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 669448 4924462 ~ 4927844 (+) True G406096
TU466818 other downstream 1116167 5371181 ~ 5373579 (+) True G406244

Expression Profile