RNA id: TU468013


Basic Information

Item Value
RNA id TU468013
length 1527
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G407340
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4259482 ~ 4263461 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGGCTTGAAGCGTTGGTTCAGTCACGCATTTGAAGAACTGTGAGATAAGGGATTTAAGAGACAGGGCTATCACAAAAACTCTAACAAGCCTGACACTTAGGCCTACTGAAACGGTGAGCAACCACATTGGGTAAGGAGAAGAAACGTTAGAAATATTCAGCAAGTAAGGAGCAATATAGACATCCCCTTACCTGGAATTAAATATACACATCTTACAGTTTTGGCTATATATAAATTTTCATAGTGTTCGTATTTAGATGCATGTCCATATACTGTATGATAAACAGAAATTTGTTTAAATATCGTATCTTCGTTTCTTCGCAGAACTCGAAGACATTTCCTTTTCATTTGATTCATAAAAATATGAAAAATCACTTTTGTTGGGGTCAGCGTCCATGGCCTTTTATAGGAGAGAAGCCGGGCCATTTTATTCGCTATCTTCTTTTTCATCTTGAACTGTGGTTGTGGAATGGTTGTAGAGTCCTTGAGCCATGAGCTGAAGAGCGAGGCCGTTTTTATAGCCGGAGGCCTTTTTGATTTTGGCTCTCTTATTCTGGAACCAGATTTTTATTTGTGACTCATTGAGGTTGAGTTCCTGGGCCAGCGACTGTCTCCGCTGCTCCGTAATGTACCGATTCGCCTGAAACTCGGCTTTAAGTCTCTGCAGCTGTTCAGCCGTGAAAGCGGTTCTTGGTCGCTTGTCTTCCTTCTCGCTTTTCTTCTTTTTCAATTTTCGTGTCCTTGGGCCTAGTGTAGAAACAGATGAAGGTCTGTCCGAGTACCTGGTGCAGTACACCCACGCAGGCCATAGTAAAGGCTGCGATTCTTTAACTGGCGGAGTTCCCCCGTTAGCGTTCACCACCATTATCGGCGTCGTATTCTCCCCGTACCTTGCTGTGGTAGTTCCATTTCCTTCGACAAGCTTTGCCGAGGTCTGCTTTGAGGATGGCGAAGACGACGAGGACGAAGAAGTGCTGTCACTACTGCAGTTTGAATCCTGGCAAAGGCTGCTATTATGCGACGGCCTTATTACCATAGGGTTAACATTCTCCCTACCCGAGGTTTGCGCCCGGTCCCTACTCCCAAGATCTTTCTTGCAGCCGAAATCTGGCCTTAGAATATTGTCGATGAAAAAGTTCGTGGTTCTGTGGGCTTGCTGCGCAGCCTGGTGAGGTAAAATCGGAGGAGATGGTATATTGGGTGAGAGCGAGACGCTCTCGGATTCAGTCGAATCACGACTATTTTGATCCTTTTGCTCCTCCATGACAGCTGGATCGTGGTCTGCACTCCAAAATTCCACTTGTTGCAAAGAGCGGTATCCGGATAAGAACAAACAAGAATGCAGTCTATAGTGTTAAAATAAAGGTATACGAAATACCTTAAGAGAAGCGACTGTCATAGCATCGGAATGCTTTCCGCGATCGAGGCGTTTCAAGTGTCAAAACACACCCGTTATTCATGTCAGACAATACATCGCGCGATGCTCCGCAGTCCCCGACTCGCTGCCCCGTGTGACAGCTCGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468003 lncRNA downstream 51328 4207797 ~ 4208154 (-) True G407330
TU467968 lncRNA downstream 79855 4156825 ~ 4179627 (-) True G407296
TU467991 lncRNA downstream 130262 4129003 ~ 4129220 (-) True G407318
TU467958 lncRNA downstream 131842 4123317 ~ 4127640 (-) False G407288
TU468016 lncRNA upstream 2893 4266354 ~ 4266553 (-) True G407343
TU468017 lncRNA upstream 3758 4267219 ~ 4267442 (-) True G407344
TU468021 lncRNA upstream 8451 4271912 ~ 4272172 (-) True G407348
TU468025 lncRNA upstream 17703 4281164 ~ 4281377 (-) True G407352
TU468070 lncRNA upstream 86062 4349523 ~ 4349764 (-) True G407387
CI01000299_04242809_04251680.mRNA mRNA downstream 7617 4242197 ~ 4251865 (-) True CI01000299_04242809_04251680
CI01000299_04227918_04239792.mRNA mRNA downstream 19690 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
CI01000299_04186183_04196219.mRNA mRNA downstream 61598 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
CI01000299_04171373_04175441.mRNA mRNA downstream 84041 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
CI01000299_04158468_04164223.mRNA mRNA downstream 94767 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
CI01000299_04370401_04385955.mRNA mRNA upstream 106940 4370401 ~ 4388020 (-) True CI01000299_04370401_04385955
CI01000299_04398464_04403711.mRNA mRNA upstream 133013 4396474 ~ 4403711 (-) False CI01000299_04398464_04403711
CI01000299_04456420_04468754.mRNA mRNA upstream 192768 4456229 ~ 4469450 (-) False CI01000299_04456420_04468754
CI01000299_04587880_04594059.mRNA mRNA upstream 324333 4587794 ~ 4594120 (-) True CI01000299_04587880_04594059
CI01000299_04603421_04609353.mRNA mRNA upstream 339930 4603391 ~ 4609353 (-) True CI01000299_04603421_04609353
TU467961 other downstream 95158 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2241432 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2378494 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2599482 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 3183591 1070607 ~ 1075891 (-) True G404372
TU468104 other upstream 212533 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 662507 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 1177876 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1555108 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1564375 5835889 ~ 5835989 (-) True G407805

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000175 True 1576 mRNA 0.44 2 NC_007112.7 7679328 ~ 7683372 (+)