RNA id: TU468021


Basic Information

Item Value
RNA id TU468021
length 261
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G407348
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4271912 ~ 4272172 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACTCCATCAGACCCTTGTACATATTAATGTTATTTTCGGGTCATTTAACTTCGCTGTGCAGGAGGGCTAGGGGCTGACGCAAAACCGTAAATCACGGAGCTGTGGAGCGGGCTGGTGCCATAACAGATTATCATATGGATTTTAGGTGAGGTTAAAGTAGTCCCTGAACAGGACCTTATTTGGGTAATGATACAGGCATATGTAGATGCGTTGACAGGCATGTTTCAGCACTGACACCTACACAACATATATTAGAGGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468017 lncRNA downstream 4470 4267219 ~ 4267442 (-) True G407344
TU468016 lncRNA downstream 5359 4266354 ~ 4266553 (-) True G407343
TU468013 lncRNA downstream 8451 4259482 ~ 4263461 (-) True G407340
TU468003 lncRNA downstream 63758 4207797 ~ 4208154 (-) True G407330
TU467968 lncRNA downstream 92285 4156825 ~ 4179627 (-) True G407296
TU468025 lncRNA upstream 8992 4281164 ~ 4281377 (-) True G407352
TU468070 lncRNA upstream 77351 4349523 ~ 4349764 (-) True G407387
TU468080 lncRNA upstream 89835 4362007 ~ 4362238 (-) True G407397
TU468042 lncRNA upstream 121232 4393404 ~ 4397008 (-) True CI01000299_04398464_04403711
TU468032 lncRNA upstream 138331 4410503 ~ 4413402 (-) False G407359
CI01000299_04242809_04251680.mRNA mRNA downstream 20047 4242197 ~ 4251865 (-) True CI01000299_04242809_04251680
CI01000299_04227918_04239792.mRNA mRNA downstream 32120 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
CI01000299_04186183_04196219.mRNA mRNA downstream 74028 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
CI01000299_04171373_04175441.mRNA mRNA downstream 96471 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
CI01000299_04158468_04164223.mRNA mRNA downstream 107197 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
CI01000299_04370401_04385955.mRNA mRNA upstream 98229 4370401 ~ 4388020 (-) True CI01000299_04370401_04385955
CI01000299_04398464_04403711.mRNA mRNA upstream 124302 4396474 ~ 4403711 (-) False CI01000299_04398464_04403711
CI01000299_04456420_04468754.mRNA mRNA upstream 184057 4456229 ~ 4469450 (-) False CI01000299_04456420_04468754
CI01000299_04587880_04594059.mRNA mRNA upstream 315622 4587794 ~ 4594120 (-) True CI01000299_04587880_04594059
CI01000299_04603421_04609353.mRNA mRNA upstream 331219 4603391 ~ 4609353 (-) True CI01000299_04603421_04609353
TU467961 other downstream 107588 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2253862 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2390924 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2611912 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 3196021 1070607 ~ 1075891 (-) True G404372
TU468104 other upstream 203822 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 653796 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 1169165 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1546397 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1555664 5835889 ~ 5835989 (-) True G407805

Expression Profile