RNA id: TU466338


Basic Information

Item Value
RNA id TU466338
length 359
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G405831
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4277378 ~ 4277736 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCATTTTCATATCACTACCGAAACAGTGTATGTTTTACTCCATTGGCTGAGACTGATTTTAGCCACACTTCTACATTTATGATCAGGAAATATTCCTGTGTCCCTCCCTCTCATAGCCTCTCTTTCATAGTAGATAGGACCATCATTTTGAGTTAAATGTGTTCAAAAGTCTGAAAATCTCTGTGTAACTTTAAGGAACATCACTACCAAACACCTTTTTTTCTACAATTAAGCAAACTTTTTTGTTCTGTTTTTTGGGGGTTATATGATAAAATGTATTTTTTATGTGTGTACAACAGTTTAGAACTGTGCGCTGATTATCATCTTTGAGCCAGCCTCAAAATTATCTAAAATTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466336 lncRNA upstream 22364 4254714 ~ 4255014 (+) True G405829
TU466335 lncRNA upstream 23314 4253762 ~ 4254064 (+) True G405828
TU466046 lncRNA upstream 34410 4241201 ~ 4242968 (+) True G405554
TU466332 lncRNA upstream 36286 4240860 ~ 4241092 (+) True G405825
TU466322 lncRNA upstream 52105 4224815 ~ 4225273 (+) True G405818
TU466340 lncRNA downstream 3688 4281424 ~ 4281630 (+) True G405833
TU466344 lncRNA downstream 7488 4285224 ~ 4285560 (+) True G405837
TU466422 lncRNA downstream 110715 4388451 ~ 4388657 (+) True G405905
TU466423 lncRNA downstream 111978 4389714 ~ 4390144 (+) True G405906
TU466425 lncRNA downstream 113395 4391131 ~ 4391513 (+) True G405908
CI01000299_04269257_04269673.mRNA mRNA upstream 7613 4268467 ~ 4269765 (+) True CI01000299_04269257_04269673
CI01000299_04259743_04263032.mRNA mRNA upstream 13885 4258921 ~ 4263493 (+) True CI01000299_04259743_04263032
CI01000299_04131136_04133439.mRNA mRNA upstream 143576 4131060 ~ 4133802 (+) False CI01000299_04131136_04133439
CI01000299_04122601_04126314.mRNA mRNA upstream 150997 4122601 ~ 4126381 (+) True CI01000299_04122601_04126314
CI01000299_04105476_04115171.mRNA mRNA upstream 162151 4105476 ~ 4115227 (+) True CI01000299_04105476_04115171
CI01000299_04472181_04474247.mRNA mRNA downstream 193220 4470956 ~ 4474271 (+) True CI01000299_04472181_04474247
CI01000299_04480751_04492829.mRNA mRNA downstream 202817 4480553 ~ 4493116 (+) False CI01000299_04480751_04492829
CI01000299_04496757_04504238.mRNA mRNA downstream 218650 4496386 ~ 4504483 (+) False CI01000299_04496757_04504238
CI01000299_04513358_04524537.mRNA mRNA downstream 235622 4513358 ~ 4526677 (+) True CI01000299_04513358_04524537
CI01000299_04532498_04539703.mRNA mRNA downstream 254362 4532098 ~ 4539919 (+) True CI01000299_04532498_04539703
TU466041 other upstream 143437 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466101 other upstream 1122204 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 3671028 604870 ~ 606350 (+) True G403972
TU463930 other upstream 3866590 364139 ~ 410788 (+) True G403609
TU463889 other upstream 4205107 72177 ~ 72271 (+) True G403578
TU466350 other downstream 17797 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 212082 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 424646 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 646726 4924462 ~ 4927844 (+) True G406096
TU466818 other downstream 1093445 5371181 ~ 5373579 (+) True G406244

Expression Profile