RNA id: TU466340


Basic Information

Item Value
RNA id TU466340
length 207
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G405833
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4281424 ~ 4281630 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTTTTAGTATGAGAGTTAAAATCCTGTAATGTGATGGGGTCGCTACCAACACATTACTGTTATTACCGAAAATGTGCAGTCACGACCGAAACATGGGATGTTTTGTCAAAAATAAAGTATATTGAATTATCAACTAAGATGTTATTATAGTGTTTGGTTCAAATGAATGAATCCTTAACTTTAAAATCAGTATGATAAACTTTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466338 lncRNA upstream 3688 4277378 ~ 4277736 (+) True G405831
TU466336 lncRNA upstream 26410 4254714 ~ 4255014 (+) True G405829
TU466335 lncRNA upstream 27360 4253762 ~ 4254064 (+) True G405828
TU466046 lncRNA upstream 38456 4241201 ~ 4242968 (+) True G405554
TU466332 lncRNA upstream 40332 4240860 ~ 4241092 (+) True G405825
TU466344 lncRNA downstream 3594 4285224 ~ 4285560 (+) True G405837
TU466422 lncRNA downstream 106821 4388451 ~ 4388657 (+) True G405905
TU466423 lncRNA downstream 108084 4389714 ~ 4390144 (+) True G405906
TU466425 lncRNA downstream 109501 4391131 ~ 4391513 (+) True G405908
TU466426 lncRNA downstream 111834 4393464 ~ 4395443 (+) True G405909
CI01000299_04269257_04269673.mRNA mRNA upstream 11659 4268467 ~ 4269765 (+) True CI01000299_04269257_04269673
CI01000299_04259743_04263032.mRNA mRNA upstream 17931 4258921 ~ 4263493 (+) True CI01000299_04259743_04263032
CI01000299_04131136_04133439.mRNA mRNA upstream 147622 4131060 ~ 4133802 (+) False CI01000299_04131136_04133439
CI01000299_04122601_04126314.mRNA mRNA upstream 155043 4122601 ~ 4126381 (+) True CI01000299_04122601_04126314
CI01000299_04105476_04115171.mRNA mRNA upstream 166197 4105476 ~ 4115227 (+) True CI01000299_04105476_04115171
CI01000299_04472181_04474247.mRNA mRNA downstream 189326 4470956 ~ 4474271 (+) True CI01000299_04472181_04474247
CI01000299_04480751_04492829.mRNA mRNA downstream 198923 4480553 ~ 4493116 (+) False CI01000299_04480751_04492829
CI01000299_04496757_04504238.mRNA mRNA downstream 214756 4496386 ~ 4504483 (+) False CI01000299_04496757_04504238
CI01000299_04513358_04524537.mRNA mRNA downstream 231728 4513358 ~ 4526677 (+) True CI01000299_04513358_04524537
CI01000299_04532498_04539703.mRNA mRNA downstream 250468 4532098 ~ 4539919 (+) True CI01000299_04532498_04539703
TU466041 other upstream 147483 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466101 other upstream 1126250 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 3675074 604870 ~ 606350 (+) True G403972
TU463930 other upstream 3870636 364139 ~ 410788 (+) True G403609
TU463889 other upstream 4209153 72177 ~ 72271 (+) True G403578
TU466350 other downstream 13903 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 208188 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 420752 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 642832 4924462 ~ 4927844 (+) True G406096
TU466818 other downstream 1089551 5371181 ~ 5373579 (+) True G406244

Expression Profile