RNA id: TU468070


Basic Information

Item Value
RNA id TU468070
length 242
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G407387
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4349523 ~ 4349764 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATTCTAGCTGCTTGCTCAGTTTATTTAAATAAAATAAGCTGAACCAACACAAATCTTTAGTTATTTACTTAATTGTCATTTGCACACAATTGTATTATGTTAAATGAAATTAAATTGGAAAATGTTAAGTTAACCTAAACCATTTGTGTTGGGACTACATGAATCATTTATGTTGCATTGATTGAAACTGGGCAGTTGATTTCTAGTTCCCAGCATGCTTTGCATAGGGATAGATCGGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468025 lncRNA downstream 68146 4281164 ~ 4281377 (-) True G407352
TU468021 lncRNA downstream 77351 4271912 ~ 4272172 (-) True G407348
TU468017 lncRNA downstream 82081 4267219 ~ 4267442 (-) True G407344
TU468016 lncRNA downstream 82970 4266354 ~ 4266553 (-) True G407343
TU468013 lncRNA downstream 86062 4259482 ~ 4263461 (-) True G407340
TU468080 lncRNA upstream 12243 4362007 ~ 4362238 (-) True G407397
TU468042 lncRNA upstream 43640 4393404 ~ 4397008 (-) True CI01000299_04398464_04403711
TU468032 lncRNA upstream 60739 4410503 ~ 4413402 (-) False G407359
TU468033 lncRNA upstream 60791 4410555 ~ 4413402 (-) False G407359
TU468034 lncRNA upstream 60791 4410555 ~ 4413402 (-) False G407359
CI01000299_04242809_04251680.mRNA mRNA downstream 97658 4242197 ~ 4251865 (-) True CI01000299_04242809_04251680
CI01000299_04227918_04239792.mRNA mRNA downstream 109731 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
CI01000299_04186183_04196219.mRNA mRNA downstream 151639 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
CI01000299_04171373_04175441.mRNA mRNA downstream 174082 4171149 ~ 4175441 (-) True CI01000299_04171373_04175441
CI01000299_04158468_04164223.mRNA mRNA downstream 184808 4158001 ~ 4164715 (-) False CI01000299_04158468_04164223
CI01000299_04370401_04385955.mRNA mRNA upstream 20637 4370401 ~ 4388020 (-) True CI01000299_04370401_04385955
CI01000299_04398464_04403711.mRNA mRNA upstream 46710 4396474 ~ 4403711 (-) False CI01000299_04398464_04403711
CI01000299_04456420_04468754.mRNA mRNA upstream 106465 4456229 ~ 4469450 (-) False CI01000299_04456420_04468754
CI01000299_04587880_04594059.mRNA mRNA upstream 238030 4587794 ~ 4594120 (-) True CI01000299_04587880_04594059
CI01000299_04603421_04609353.mRNA mRNA upstream 253627 4603391 ~ 4609353 (-) True CI01000299_04603421_04609353
TU467961 other downstream 185199 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2331473 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2468535 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2689523 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 3273632 1070607 ~ 1075891 (-) True G404372
TU468104 other upstream 126230 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 576204 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 1091573 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1468805 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1478072 5835889 ~ 5835989 (-) True G407805

Expression Profile