RNA id: TU466422


Basic Information

Item Value
RNA id TU466422
length 207
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G405905
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4388451 ~ 4388657 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAACATCTCGAGGGGTCTTTGAAAAAAGAAGTGCACTTAATTGTACTGAATGTAGGCTACACTTCTAGTTCACTCCAAAACTGTGCATGCATGCATGCAGATAATGTAATATTAGTGAAATAAATGGTCACTTGAGCAATGGTTTCTCTTTTAAAAAGTGCACTGTAATGTTAAAATAGAAGTTTTAACTTAAAGTACATTTTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466344 lncRNA upstream 102891 4285224 ~ 4285560 (+) True G405837
TU466340 lncRNA upstream 106821 4281424 ~ 4281630 (+) True G405833
TU466338 lncRNA upstream 110715 4277378 ~ 4277736 (+) True G405831
TU466336 lncRNA upstream 133437 4254714 ~ 4255014 (+) True G405829
TU466335 lncRNA upstream 134387 4253762 ~ 4254064 (+) True G405828
TU466423 lncRNA downstream 1057 4389714 ~ 4390144 (+) True G405906
TU466425 lncRNA downstream 2474 4391131 ~ 4391513 (+) True G405908
TU466426 lncRNA downstream 4807 4393464 ~ 4395443 (+) True G405909
TU466427 lncRNA downstream 11922 4400579 ~ 4403306 (+) True G405910
TU466429 lncRNA downstream 26135 4414792 ~ 4415011 (+) True G405912
CI01000299_04269257_04269673.mRNA mRNA upstream 118686 4268467 ~ 4269765 (+) True CI01000299_04269257_04269673
CI01000299_04259743_04263032.mRNA mRNA upstream 124958 4258921 ~ 4263493 (+) True CI01000299_04259743_04263032
CI01000299_04131136_04133439.mRNA mRNA upstream 254649 4131060 ~ 4133802 (+) False CI01000299_04131136_04133439
CI01000299_04122601_04126314.mRNA mRNA upstream 262070 4122601 ~ 4126381 (+) True CI01000299_04122601_04126314
CI01000299_04105476_04115171.mRNA mRNA upstream 273224 4105476 ~ 4115227 (+) True CI01000299_04105476_04115171
CI01000299_04472181_04474247.mRNA mRNA downstream 82299 4470956 ~ 4474271 (+) True CI01000299_04472181_04474247
CI01000299_04480751_04492829.mRNA mRNA downstream 91896 4480553 ~ 4493116 (+) False CI01000299_04480751_04492829
CI01000299_04496757_04504238.mRNA mRNA downstream 107729 4496386 ~ 4504483 (+) False CI01000299_04496757_04504238
CI01000299_04513358_04524537.mRNA mRNA downstream 124701 4513358 ~ 4526677 (+) True CI01000299_04513358_04524537
CI01000299_04532498_04539703.mRNA mRNA downstream 143441 4532098 ~ 4539919 (+) True CI01000299_04532498_04539703
TU466350 other upstream 68310 4295533 ~ 4320141 (+) True G405842
TU466041 other upstream 254510 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466101 other upstream 1233277 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 3782101 604870 ~ 606350 (+) True G403972
TU463930 other upstream 3977663 364139 ~ 410788 (+) True G403609
TU466383 other downstream 101161 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 313725 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 535805 4924462 ~ 4927844 (+) True G406096
TU466818 other downstream 982524 5371181 ~ 5373579 (+) True G406244
TU466732 other downstream 1849181 6237838 ~ 6300508 (+) True G406161

Expression Profile