RNA id: TU466423


Basic Information

Item Value
RNA id TU466423
length 431
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G405906
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4389714 ~ 4390144 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACCCTGTAGCCGGTTCACCACTGTTCCTTCCTTGGAGCACTTTTGATAGATACTGACCACTGCAGACCAGGAACACCCCACAAGAGCTGCAGTTTTGGAGATGCTCTGACCCAGTCGTCTAGCCATCACAATTTGGCCCTTGTCAAACTCGCTCAAATCCTTACGCTTGCCCATTTTTCCTGCTTCTAACACATCAACTTTGAGGACAAAATGTTCACTTGCTGCCTAATATATCCACCCACTAACAGGTGCCGTGATGAAGAGATAATATTCACTTCACCTGTCAGTGCTCATAATGTTATGCATGATCGGTGTATATGTTGAGGCATTAGGACCCCCACAGACCACAGGGTGAGCAGCGCCCCCTGCTGGCCTCACTAACACCTCTGCCAGCAGCAACCTACAGCAGATCATCATGCTACTTCTTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466422 lncRNA upstream 1057 4388451 ~ 4388657 (+) True G405905
TU466344 lncRNA upstream 104154 4285224 ~ 4285560 (+) True G405837
TU466340 lncRNA upstream 108084 4281424 ~ 4281630 (+) True G405833
TU466338 lncRNA upstream 111978 4277378 ~ 4277736 (+) True G405831
TU466336 lncRNA upstream 134700 4254714 ~ 4255014 (+) True G405829
TU466425 lncRNA downstream 987 4391131 ~ 4391513 (+) True G405908
TU466426 lncRNA downstream 3320 4393464 ~ 4395443 (+) True G405909
TU466427 lncRNA downstream 10435 4400579 ~ 4403306 (+) True G405910
TU466429 lncRNA downstream 24648 4414792 ~ 4415011 (+) True G405912
TU466393 lncRNA downstream 28160 4418304 ~ 4448995 (+) True G405876
CI01000299_04269257_04269673.mRNA mRNA upstream 119949 4268467 ~ 4269765 (+) True CI01000299_04269257_04269673
CI01000299_04259743_04263032.mRNA mRNA upstream 126221 4258921 ~ 4263493 (+) True CI01000299_04259743_04263032
CI01000299_04131136_04133439.mRNA mRNA upstream 255912 4131060 ~ 4133802 (+) False CI01000299_04131136_04133439
CI01000299_04122601_04126314.mRNA mRNA upstream 263333 4122601 ~ 4126381 (+) True CI01000299_04122601_04126314
CI01000299_04105476_04115171.mRNA mRNA upstream 274487 4105476 ~ 4115227 (+) True CI01000299_04105476_04115171
CI01000299_04472181_04474247.mRNA mRNA downstream 80812 4470956 ~ 4474271 (+) True CI01000299_04472181_04474247
CI01000299_04480751_04492829.mRNA mRNA downstream 90409 4480553 ~ 4493116 (+) False CI01000299_04480751_04492829
CI01000299_04496757_04504238.mRNA mRNA downstream 106242 4496386 ~ 4504483 (+) False CI01000299_04496757_04504238
CI01000299_04513358_04524537.mRNA mRNA downstream 123214 4513358 ~ 4526677 (+) True CI01000299_04513358_04524537
CI01000299_04532498_04539703.mRNA mRNA downstream 141954 4532098 ~ 4539919 (+) True CI01000299_04532498_04539703
TU466350 other upstream 69573 4295533 ~ 4320141 (+) True G405842
TU466041 other upstream 255773 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466101 other upstream 1234540 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 3783364 604870 ~ 606350 (+) True G403972
TU463930 other upstream 3978926 364139 ~ 410788 (+) True G403609
TU466383 other downstream 99674 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 312238 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 534318 4924462 ~ 4927844 (+) True G406096
TU466818 other downstream 981037 5371181 ~ 5373579 (+) True G406244
TU466732 other downstream 1847694 6237838 ~ 6300508 (+) True G406161

Expression Profile