Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU466426 |
| length | 1980 |
| lncRNA type | inter_gene |
| GC content | 0.36 |
| exon number | 1 |
| gene id | G405909 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 4393464 ~ 4395443 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU466425 | lncRNA | upstream | 1951 | 4391131 ~ 4391513 (+) | True | G405908 |
| TU466423 | lncRNA | upstream | 3320 | 4389714 ~ 4390144 (+) | True | G405906 |
| TU466422 | lncRNA | upstream | 4807 | 4388451 ~ 4388657 (+) | True | G405905 |
| TU466344 | lncRNA | upstream | 107904 | 4285224 ~ 4285560 (+) | True | G405837 |
| TU466340 | lncRNA | upstream | 111834 | 4281424 ~ 4281630 (+) | True | G405833 |
| TU466427 | lncRNA | downstream | 5136 | 4400579 ~ 4403306 (+) | True | G405910 |
| TU466429 | lncRNA | downstream | 19349 | 4414792 ~ 4415011 (+) | True | G405912 |
| TU466393 | lncRNA | downstream | 22861 | 4418304 ~ 4448995 (+) | True | G405876 |
| TU466452 | lncRNA | downstream | 58149 | 4453592 ~ 4453869 (+) | True | G405931 |
| TU466453 | lncRNA | downstream | 60003 | 4455446 ~ 4455685 (+) | True | G405932 |
| CI01000299_04269257_04269673.mRNA | mRNA | upstream | 123699 | 4268467 ~ 4269765 (+) | True | CI01000299_04269257_04269673 |
| CI01000299_04259743_04263032.mRNA | mRNA | upstream | 129971 | 4258921 ~ 4263493 (+) | True | CI01000299_04259743_04263032 |
| CI01000299_04131136_04133439.mRNA | mRNA | upstream | 259662 | 4131060 ~ 4133802 (+) | False | CI01000299_04131136_04133439 |
| CI01000299_04122601_04126314.mRNA | mRNA | upstream | 267083 | 4122601 ~ 4126381 (+) | True | CI01000299_04122601_04126314 |
| CI01000299_04105476_04115171.mRNA | mRNA | upstream | 278237 | 4105476 ~ 4115227 (+) | True | CI01000299_04105476_04115171 |
| CI01000299_04472181_04474247.mRNA | mRNA | downstream | 75513 | 4470956 ~ 4474271 (+) | True | CI01000299_04472181_04474247 |
| CI01000299_04480751_04492829.mRNA | mRNA | downstream | 85110 | 4480553 ~ 4493116 (+) | False | CI01000299_04480751_04492829 |
| CI01000299_04496757_04504238.mRNA | mRNA | downstream | 100943 | 4496386 ~ 4504483 (+) | False | CI01000299_04496757_04504238 |
| CI01000299_04513358_04524537.mRNA | mRNA | downstream | 117915 | 4513358 ~ 4526677 (+) | True | CI01000299_04513358_04524537 |
| CI01000299_04532498_04539703.mRNA | mRNA | downstream | 136655 | 4532098 ~ 4539919 (+) | True | CI01000299_04532498_04539703 |
| TU466350 | other | upstream | 73323 | 4295533 ~ 4320141 (+) | True | G405842 |
| TU466041 | other | upstream | 259523 | 4131258 ~ 4133941 (+) | True | CI01000299_04131136_04133439 |
| TU466101 | other | upstream | 1238290 | 3154597 ~ 3155174 (+) | True | G405609 |
| TU464370 | other | upstream | 3787114 | 604870 ~ 606350 (+) | True | G403972 |
| TU463930 | other | upstream | 3982676 | 364139 ~ 410788 (+) | True | G403609 |
| TU466383 | other | downstream | 94375 | 4505404 ~ 4505917 (+) | True | G405866 |
| TU466374 | other | downstream | 306939 | 4702382 ~ 4702508 (+) | True | G405864 |
| TU466651 | other | downstream | 529019 | 4924462 ~ 4927844 (+) | True | G406096 |
| TU466818 | other | downstream | 975738 | 5371181 ~ 5373579 (+) | True | G406244 |
| TU466732 | other | downstream | 1842395 | 6237838 ~ 6300508 (+) | True | G406161 |
