RNA id: TU468037


Basic Information

Item Value
RNA id TU468037
length 2620
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G407359
representative False

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4410503 ~ 4413402 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGCTTATCCTGTCTCTCTTTTCCTCAGCGAACTTTAGTAGGGTCAGGATGTTGCGGTTTAACACGTGCGGCTCTTCGGCAAGTCGCTTTGTGTCTGCAAGCGTATTCTTCAGTCTAAATAAAGTTGGGAGTTCAGAAACACGTGGCCATGGATGATGTTCGCCATTGGCGTTTGAACGGGAAGAACGTTCGCGTTTGATGCATCGATTCTTAAATCGCGATGAATGCGATCAATGGATTGCGGTAAGTGAACCTTAGACAATATATTCTGTTTGATATGCACTTTATATATAAAAATTATTGAGCCGCTGATGACTTCTAATACTTTTCTGACACCTCGTATGAACGCTGTATTCAGCAGCTGATTATGAAATGTAGTCTGAGGCTCTTTTGCTTTTGCATGTGATTGAATTTCATGCTATAGTTTTTTTTTTTTTTTTTTTGTCATATGTGAAGGTAATAGGCAAGATACTGATTTTTCTACAAGTAACTTGACATTATAGGCTTTTTGACTTAAAGCCTAGTCAGTTTTAGGTCCCTTGTTAAAATCACTATATAAAGTGTATGTATTTACTAATGTGGTTCTATAATTTTGAAATTAACTCCTAATGTGCGAATGGGAATAAGCCCCAGTTCTATAAATTTAAATCCCAATTTGGTGAGCACTTGGCTACAAAAGTCATGGAAATTCATTGGTCAAAGTGTGGGAACTCTTATTTTTGTAAGTTGTGTTAATTTGCATTTAAAGGGTTAGTTCATCCAAAAAATGAAATGTCAATAATTACTTGCCCTCATGTCATTCCACACCCGTAACGCAAATTAAGATATTTTTGAAATCCGATGGCTCAGTGAGGCCTGCATTGACCGCAAGATAATGCTTTCAATGTCCAGAAAGGTACTAAAGATGCCTTTTTAAAAGTTCATGTGACTACAGTGGTTCAACCTTAAACTTTATGAAGCGACGAGAATACTTTGTGTGCCATAAAAACAAAATAACGACTTTATTCAACTGTCTAGTGATGGGTGATTTCAAAACACTGCTTCATGAAGCTTCAAAGCTTTACAAATCTTGTTTTGAATCAGTGGTTCGGAGCTTGTATCAACTGCCAAAGTCACATGACTTCAGTAAATGATGCTTCGTTACGACACAAACGTTTCATAATTTCATTGGTTTGCGTCACTTTGGCTGTTTGATACAAGCTCTGAACCACTGATTCGAAACAAAAGATTCGTAAAGCTTCATGAAGCAGTGTTTTGAAATTGCCCGTCACTAGATATTGTTGAATAAAGTCATTTTGTTTAACTTTTTTTGGCACTCGTCGCTTCATAACATTAAGGTTGAACCACTGTAGTCGCGTGAACTATTTTAGATATCTTTAGTAGCTTTCTGGGCATTTGAAAGTGTTAATTATCTTACGGTCAATAGAGGCCTCCCTGAGCCATCGGATTTTATCAAAAATATCTTAATTTGTGTTCCGAAAATGAACGAAGGTCTTACAGGTGTGGAACGACATGAGGGTGAGTAACGACAGAATTTTCATTTTTGGCTGAACTAGCCCTTTAAGGTATGGCATTTCAGCTACTGAGGTTGCTCTGTTTTTTTTCCCCCTATCAGCTTTCACTGACGGTTCAAATGTTGGAGTTCCTGACTGCAAAAAAGTAGTTTTGTGAGGTGAGACCCTCTTCATTTCTCCTAATATTGCAAGTTTGTGAAATGTACTGCTTAACTGATCCATGGTGAATGAGTCTGATATAAAAATGATTGAGCCGCTGATGACTTCTACTACTAATACTTTTCTGACACCTCGTATGAACGCTGTATTCAGCAGCTGATTATGAACTGTAGTCTGAGGCTCTTTTACAATCACATGTATTAAGCAAATTTAGGATTCCAATGTGCATGCTAATGGTTTATGCCTTTTTATAGAGAACATGTAATGTTAATAGGCAAGATTCTGCTTTTCAGCATTATAGGCTTTTTGTCTTCACATGCTCTCGGAAATATCGTAAATACGAGTTTCCTAGGTTTAAAAATTTCACATGAACACCTCATTTCGAATGCGGCGAGCTTGTAATCACGACTTCAGAAGTGGGAATTATCAAATTTCCGATAGCACGTGAAGGCAGCATTAGCCCCAAATCTTATTTAAATCCCAATCTGGTGAGGACATGGCTACAAAAGTCATGGAAATTCAAAGTGTGGCAACTCTTATTTTTGTAAGTTGCATTTAAAGTATGGCATTTCAGCTACTGAGGTTGCTTTGTTTTTTCCCCATCAGCTTTCACTGATGGTTCGAATGTTGGACTTCCTGACTGCGCAAAAAAAAAAAAAGTGGATTTGTGAGGTGAGACCCTTTTAAGTTTTCTCCTAATATTGCAAAATTTTGTGACCTGTATTACTTAACTGCTCCATGGTTAATAGGTCTGATTGTGAACTCTCCTAGAGCAGTTTAACATCCTAAAATGCAATGTACCCTTGAATGATGCACCTTTACATCTTCATTTTTATTTGCAGATGTGAGGACCAAGAAATCCATCCAGTGGCATTCAGTTTGGAATATGATCGCCTGTTTATGCATGGATGCCACTGTACAAAAGGGTGCATTTTTGAAACCATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468042 lncRNA downstream 13547 4393404 ~ 4397008 (-) True CI01000299_04398464_04403711
TU468080 lncRNA downstream 48317 4362007 ~ 4362238 (-) True G407397
TU468070 lncRNA downstream 60791 4349523 ~ 4349764 (-) True G407387
TU468025 lncRNA downstream 129178 4281164 ~ 4281377 (-) True G407352
TU468021 lncRNA downstream 138383 4271912 ~ 4272172 (-) True G407348
TU468089 lncRNA upstream 42044 4455446 ~ 4455680 (-) True G407406
TU468090 lncRNA upstream 51343 4464745 ~ 4466067 (-) False CI01000299_04456420_04468754
TU468097 lncRNA upstream 51343 4464745 ~ 4466534 (-) False CI01000299_04456420_04468754
TU468091 lncRNA upstream 51475 4464877 ~ 4466067 (-) True CI01000299_04456420_04468754
TU468098 lncRNA upstream 53416 4466818 ~ 4467020 (-) True G407408
CI01000299_04398464_04403711.mRNA mRNA downstream 6844 4396474 ~ 4403711 (-) False CI01000299_04398464_04403711
CI01000299_04370401_04385955.mRNA mRNA downstream 22535 4370401 ~ 4388020 (-) True CI01000299_04370401_04385955
CI01000299_04242809_04251680.mRNA mRNA downstream 158690 4242197 ~ 4251865 (-) True CI01000299_04242809_04251680
CI01000299_04227918_04239792.mRNA mRNA downstream 170763 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
CI01000299_04186183_04196219.mRNA mRNA downstream 212671 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
CI01000299_04456420_04468754.mRNA mRNA upstream 42827 4456229 ~ 4469450 (-) False CI01000299_04456420_04468754
CI01000299_04587880_04594059.mRNA mRNA upstream 174392 4587794 ~ 4594120 (-) True CI01000299_04587880_04594059
CI01000299_04603421_04609353.mRNA mRNA upstream 189989 4603391 ~ 4609353 (-) True CI01000299_04603421_04609353
CI01000299_04645836_04651938.mRNA mRNA upstream 232237 4645639 ~ 4651938 (-) True CI01000299_04645836_04651938
CI01000299_04658984_04668843.mRNA mRNA upstream 245493 4658895 ~ 4669022 (-) True CI01000299_04658984_04668843
TU467961 other downstream 246231 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2392505 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2529567 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2750555 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 3334664 1070607 ~ 1075891 (-) True G404372
TU468104 other upstream 62592 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 512566 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 1027935 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1405167 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1414434 5835889 ~ 5835989 (-) True G407805

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00002916 False 647 lncRNA 0.41 3 NC_007112.7 7919319 ~ 7920694 (-)