RNA id: TU466453


Basic Information

Item Value
RNA id TU466453
length 240
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G405932
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4455446 ~ 4455685 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAGGAGTGGCTTCACAACGACTCCGTGACTGTTCTTGAATGGCCCAGCCAGAGCCCTGACTTAAACCCAATTGAGCATCTCTGGAGAGACCTAAAAATGGCTGTCCACCAACGTTTACCATCCAACCTGACAGAACTGGAGAGGATCTGCAAGGAGGAATGGCAGAGGATCCCCAAATCCAGGTGGGAAAAACTTGTTGCATCTTTCCCAAAAAGACTCATGGCTGTATTAGATCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466452 lncRNA upstream 1577 4453592 ~ 4453869 (+) True G405931
TU466393 lncRNA upstream 6451 4418304 ~ 4448995 (+) True G405876
TU466429 lncRNA upstream 40435 4414792 ~ 4415011 (+) True G405912
TU466427 lncRNA upstream 52140 4400579 ~ 4403306 (+) True G405910
TU466426 lncRNA upstream 60003 4393464 ~ 4395443 (+) True G405909
TU466460 lncRNA downstream 20303 4475988 ~ 4550799 (+) True G405938
TU466395 lncRNA downstream 44152 4509933 ~ 4510740 (+) True G405878
TU466377 lncRNA downstream 194251 4649936 ~ 4665044 (+) False G405865
TU466398 lncRNA downstream 202656 4658341 ~ 4663395 (+) True G405881
TU466381 lncRNA downstream 208249 4663934 ~ 4665044 (+) True G405865
CI01000299_04269257_04269673.mRNA mRNA upstream 185681 4268467 ~ 4269765 (+) True CI01000299_04269257_04269673
CI01000299_04259743_04263032.mRNA mRNA upstream 191953 4258921 ~ 4263493 (+) True CI01000299_04259743_04263032
CI01000299_04131136_04133439.mRNA mRNA upstream 321644 4131060 ~ 4133802 (+) False CI01000299_04131136_04133439
CI01000299_04122601_04126314.mRNA mRNA upstream 329065 4122601 ~ 4126381 (+) True CI01000299_04122601_04126314
CI01000299_04105476_04115171.mRNA mRNA upstream 340219 4105476 ~ 4115227 (+) True CI01000299_04105476_04115171
CI01000299_04472181_04474247.mRNA mRNA downstream 15271 4470956 ~ 4474271 (+) True CI01000299_04472181_04474247
CI01000299_04480751_04492829.mRNA mRNA downstream 24868 4480553 ~ 4493116 (+) False CI01000299_04480751_04492829
CI01000299_04496757_04504238.mRNA mRNA downstream 40701 4496386 ~ 4504483 (+) False CI01000299_04496757_04504238
CI01000299_04513358_04524537.mRNA mRNA downstream 57673 4513358 ~ 4526677 (+) True CI01000299_04513358_04524537
CI01000299_04532498_04539703.mRNA mRNA downstream 76413 4532098 ~ 4539919 (+) True CI01000299_04532498_04539703
TU466350 other upstream 135305 4295533 ~ 4320141 (+) True G405842
TU466041 other upstream 321505 4131258 ~ 4133941 (+) True CI01000299_04131136_04133439
TU466101 other upstream 1300272 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 3849096 604870 ~ 606350 (+) True G403972
TU463930 other upstream 4044658 364139 ~ 410788 (+) True G403609
TU466383 other downstream 34133 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 246697 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 468777 4924462 ~ 4927844 (+) True G406096
TU466818 other downstream 915496 5371181 ~ 5373579 (+) True G406244
TU466732 other downstream 1782153 6237838 ~ 6300508 (+) True G406161

Expression Profile