RNA id: TU468089


Basic Information

Item Value
RNA id TU468089
length 235
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G407406
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4455446 ~ 4455680 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCTAATACAGCCATGAGTCTTTTTGGGAAAGATGCAACAAGTTTTTCCCACCTGGATTTGGGGATCCTCTGCCATTCCTCCTTGCAGATCCTCTCCAGTTCTGTCAGGTTGGATGGTAAACGTTGGTGGACAGCCATTTTTAGGTCTCTCCAGAGATGCTCAATTGGGTTTAAGTCAGGGCTCTGGCTGGGCCATTCAAGAACAGTCACGGAGTCGTTGTGAAGCCACTCCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468032 lncRNA downstream 42044 4410503 ~ 4413402 (-) False G407359
TU468033 lncRNA downstream 42044 4410555 ~ 4413402 (-) False G407359
TU468034 lncRNA downstream 42044 4410555 ~ 4413402 (-) False G407359
TU468036 lncRNA downstream 42044 4410555 ~ 4413402 (-) False G407359
TU468037 lncRNA downstream 42044 4410555 ~ 4413402 (-) False G407359
TU468090 lncRNA upstream 9065 4464745 ~ 4466067 (-) False CI01000299_04456420_04468754
TU468097 lncRNA upstream 9065 4464745 ~ 4466534 (-) False CI01000299_04456420_04468754
TU468091 lncRNA upstream 9197 4464877 ~ 4466067 (-) True CI01000299_04456420_04468754
TU468098 lncRNA upstream 11138 4466818 ~ 4467020 (-) True G407408
TU468099 lncRNA upstream 14332 4470012 ~ 4470215 (-) True G407409
CI01000299_04398464_04403711.mRNA mRNA downstream 51735 4396474 ~ 4403711 (-) False CI01000299_04398464_04403711
CI01000299_04370401_04385955.mRNA mRNA downstream 67426 4370401 ~ 4388020 (-) True CI01000299_04370401_04385955
CI01000299_04242809_04251680.mRNA mRNA downstream 203581 4242197 ~ 4251865 (-) True CI01000299_04242809_04251680
CI01000299_04227918_04239792.mRNA mRNA downstream 215654 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
CI01000299_04186183_04196219.mRNA mRNA downstream 257562 4184967 ~ 4197884 (-) True CI01000299_04186183_04196219
CI01000299_04456420_04468754.mRNA mRNA upstream 549 4456229 ~ 4469450 (-) False CI01000299_04456420_04468754
CI01000299_04587880_04594059.mRNA mRNA upstream 132114 4587794 ~ 4594120 (-) True CI01000299_04587880_04594059
CI01000299_04603421_04609353.mRNA mRNA upstream 147711 4603391 ~ 4609353 (-) True CI01000299_04603421_04609353
CI01000299_04645836_04651938.mRNA mRNA upstream 189959 4645639 ~ 4651938 (-) True CI01000299_04645836_04651938
CI01000299_04658984_04668843.mRNA mRNA upstream 203215 4658895 ~ 4669022 (-) True CI01000299_04658984_04668843
TU467961 other downstream 291122 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2437396 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2574458 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2795446 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 3379555 1070607 ~ 1075891 (-) True G404372
TU468104 other upstream 20314 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 470288 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 985657 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1362889 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1372156 5835889 ~ 5835989 (-) True G407805

Expression Profile