RNA id: TU468099


Basic Information

Item Value
RNA id TU468099
length 204
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G407409
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4470012 ~ 4470215 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCCCATCTAGAAACCAATCACACAATCACACCTGTTTCCCATCAGTGACACTTTATAAGCTGCACTCAAACACACACACATTGTGGAGTATTGTTTAGCCCTGCATTGCGCCTTGGTCTCTGCGTTGTCGCCGTGTTTCTTGCCCTGCCTGTATTTTTGACTTTGGACTATTTCCTGGATTATGATCGTTTGCTGCCTGCCCT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468098 lncRNA downstream 2992 4466818 ~ 4467020 (-) True G407408
TU468097 lncRNA downstream 3478 4464745 ~ 4466534 (-) False CI01000299_04456420_04468754
TU468090 lncRNA downstream 3945 4464745 ~ 4466067 (-) False CI01000299_04456420_04468754
TU468091 lncRNA downstream 3945 4464877 ~ 4466067 (-) True CI01000299_04456420_04468754
TU468089 lncRNA downstream 14332 4455446 ~ 4455680 (-) True G407406
TU468106 lncRNA upstream 8774 4478989 ~ 4554077 (-) True G407414
TU468108 lncRNA upstream 10654 4480869 ~ 4481664 (-) True G407416
TU468123 lncRNA upstream 34495 4504710 ~ 4563664 (-) True G407422
TU468132 lncRNA upstream 38907 4509122 ~ 4514347 (-) True G407429
TU468137 lncRNA upstream 53196 4523411 ~ 4547806 (-) True G407434
CI01000299_04456420_04468754.mRNA mRNA downstream 562 4456229 ~ 4469450 (-) False CI01000299_04456420_04468754
CI01000299_04398464_04403711.mRNA mRNA downstream 66301 4396474 ~ 4403711 (-) False CI01000299_04398464_04403711
CI01000299_04370401_04385955.mRNA mRNA downstream 81992 4370401 ~ 4388020 (-) True CI01000299_04370401_04385955
CI01000299_04242809_04251680.mRNA mRNA downstream 218147 4242197 ~ 4251865 (-) True CI01000299_04242809_04251680
CI01000299_04227918_04239792.mRNA mRNA downstream 230220 4227520 ~ 4239792 (-) True CI01000299_04227918_04239792
CI01000299_04587880_04594059.mRNA mRNA upstream 117579 4587794 ~ 4594120 (-) True CI01000299_04587880_04594059
CI01000299_04603421_04609353.mRNA mRNA upstream 133176 4603391 ~ 4609353 (-) True CI01000299_04603421_04609353
CI01000299_04645836_04651938.mRNA mRNA upstream 175424 4645639 ~ 4651938 (-) True CI01000299_04645836_04651938
CI01000299_04658984_04668843.mRNA mRNA upstream 188680 4658895 ~ 4669022 (-) True CI01000299_04658984_04668843
CI01000299_04708767_04714088.mRNA mRNA upstream 238288 4708503 ~ 4714088 (-) True CI01000299_04708767_04714088
TU467961 other downstream 305688 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 2451962 2017687 ~ 2018050 (-) True G405053
TU465428 other downstream 2589024 1855639 ~ 1880988 (-) True G404976
TU465225 other downstream 2810012 1659655 ~ 1660000 (-) True G404784
TU464792 other downstream 3394121 1070607 ~ 1075891 (-) True G404372
TU468104 other upstream 5779 4475994 ~ 4550721 (-) True G407413
TU468235 other upstream 455753 4925968 ~ 4928818 (-) True G407509
TU468421 other upstream 971122 5455914 ~ 5456108 (-) True G407665
TU468578 other upstream 1348354 5923656 ~ 5924133 (-) True CI01000299_05919510_05924061
TU468584 other upstream 1357621 5835889 ~ 5835989 (-) True G407805

Expression Profile